Variant report

Variant	rs34087210
Chromosome Location	chr1:47689842-47689843
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:47677228-47691056	K562	blood:	n/a	n/a
2	SUZ12	chr1:47689128-47692812	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr1:47689122-47689923	K562	blood:	n/a	n/a
4	POLR2A	chr1:47689763-47691090	K562	blood:	n/a	n/a

Variant related genes	Relation type
TAL1	TF binding region
ENSG00000226252	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1015890	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10789504	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890471	0.82[AMR][1000 genomes]
rs10890472	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11211479	0.82[AMR][1000 genomes]
rs11211481	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211482	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12057184	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12083555	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12141363	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144626	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12145836	0.81[AMR][1000 genomes]
rs12407157	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1543502	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2008713	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2984618	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4134058	0.82[AMR][1000 genomes]
rs4926521	0.82[AMR][1000 genomes]
rs4926524	0.82[AMR][1000 genomes]
rs4926725	0.82[AMR][1000 genomes]
rs4926726	0.83[AMR][1000 genomes]
rs61782665	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6658125	0.82[AMR][1000 genomes]
rs6669341	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6692253	0.82[AMR][1000 genomes]
rs6695898	0.81[AMR][1000 genomes]
rs6700838	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701381	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs741959	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs743270	0.82[AMR][1000 genomes]
rs7525145	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7534271	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs765861	1.00[ASN][1000 genomes]
rs7664	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs911910	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs977747	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34087210	RP1-18D14.7	cis	Whole Blood	GTEx

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47674400-47690600	Weak transcription	Gastric	stomach
2	chr1:47683600-47690000	Strong transcription	K562	blood
3	chr1:47683800-47690000	Strong transcription	HUVEC	blood vessel
4	chr1:47686400-47690600	Weak transcription	Right Ventricle	heart
5	chr1:47687600-47690200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:47688600-47690600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:47688800-47690800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:47689200-47690200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
9	chr1:47689200-47690400	Weak transcription	Right Atrium	heart
10	chr1:47689200-47690600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
11	chr1:47689400-47690000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
12	chr1:47689400-47690200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
13	chr1:47689400-47690200	Strong transcription	Spleen	Spleen
14	chr1:47689400-47690400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
15	chr1:47689400-47690800	Bivalent Enhancer	Lung	lung
16	chr1:47689600-47690200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr1:47689600-47690400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
18	chr1:47689600-47691000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
19	chr1:47689800-47690000	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr1:47689800-47690600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
21	chr1:47689800-47691200	Bivalent Enhancer	Left Ventricle	heart
22	chr1:47689800-47696600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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