Variant report

Variant	rs6701381
Chromosome Location	chr1:47704240-47704241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47703389..47704925-chr1:47777568..47779831,2	K562	blood:

Variant related genes	Relation type
ENSG00000123473	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1015890	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10789504	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10890472	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11211481	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11211482	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12057184	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12083555	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12141363	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12144626	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12407157	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1543502	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1810658	0.82[AMR][1000 genomes]
rs2008713	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2984618	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34087210	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61782665	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6669341	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6695898	0.81[EUR][1000 genomes]
rs6700838	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs741959	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7525145	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7534271	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7664	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs911910	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs977747	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6701381	RP1-18D14.7	cis	Whole Blood	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47698200-47704400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr1:47701600-47705600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr1:47701800-47704800	Weak transcription	Spleen	Spleen
4	chr1:47701800-47705600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:47702000-47705800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:47702200-47704800	Weak transcription	Lung	lung
7	chr1:47702200-47707000	Weak transcription	Placenta	Placenta
8	chr1:47703800-47704600	Enhancers	K562	blood
9	chr1:47703800-47705000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:47704000-47706800	Weak transcription	HUVEC	blood vessel
11	chr1:47704200-47705600	Enhancers	Primary hematopoietic stem cells	blood

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