Variant report

Variant	rs10890472
Chromosome Location	chr1:47708112-47708113
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47705490..47714722-chr1:47717231..47723503,17	K562	blood:
2	chr1:47706169..47709093-chr1:47709485..47711498,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1015890	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10789504	0.84[EUR][1000 genomes]
rs11211479	0.95[ASN][1000 genomes]
rs11211480	0.85[CEU][hapmap];0.87[MEX][hapmap]
rs11211481	0.92[CEU][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11211482	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12057184	0.82[AMR][1000 genomes]
rs12083555	1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141363	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12144626	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12407157	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1543502	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1810658	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2008713	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2249636	0.94[ASW][hapmap]
rs2250495	1.00[ASW][hapmap]
rs2984618	0.92[CEU][hapmap];0.98[GIH][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34087210	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3737771	1.00[JPT][hapmap]
rs61782665	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6669341	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6700838	0.92[CEU][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6701381	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72637985	0.81[ASN][1000 genomes]
rs741959	0.84[EUR][1000 genomes]
rs7525145	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7534271	0.92[CEU][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7664	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs911910	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs977747	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs10890472	CMPK1	cis	lymphoblastoid	seeQTL
rs10890472	RP1-18D14.7	cis	Whole Blood	GTEx
rs10890472	CYP4A11	cis	parietal	SCAN
rs10890472	SKP2	trans	parietal	SCAN
rs10890472	STIL	cis	cerebellum	SCAN
rs10890472	MPL	cis	cerebellum	SCAN
rs10890472	PDZK1IP1	cis	multi-tissue	Pritchard

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47705200-47766400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:47705600-47766400	Weak transcription	Primary T cells from cord blood	blood
3	chr1:47705800-47709400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:47705800-47714800	Weak transcription	Fetal Thymus	thymus
5	chr1:47706400-47709200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr1:47706800-47708200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:47706800-47709800	Enhancers	Spleen	Spleen
8	chr1:47707000-47708200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:47707400-47709400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr1:47707600-47716600	Weak transcription	Hela-S3	cervix
11	chr1:47707600-47722800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr1:47707800-47709200	Weak transcription	HUVEC	blood vessel
13	chr1:47707800-47711400	Enhancers	K562	blood
14	chr1:47708000-47715200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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