Variant report

Variant	rs6669341
Chromosome Location	chr1:47678458-47678459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1015890	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10789504	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10890471	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10890472	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211479	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11211481	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11211482	1.00[ASN][1000 genomes]
rs12057184	0.82[AMR][1000 genomes]
rs12083555	1.00[ASN][1000 genomes]
rs12141363	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12144626	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145836	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12407157	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1543502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1810658	1.00[ASN][1000 genomes]
rs2008713	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2984618	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34087210	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4134058	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4926521	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4926524	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4926725	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4926726	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61782665	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6658125	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6692253	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6695898	0.82[EUR][1000 genomes]
rs6700838	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6701381	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72637985	0.81[ASN][1000 genomes]
rs741959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs743270	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7525145	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7534271	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7664	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs911910	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs977747	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6669341	RP1-18D14.7	cis	Whole Blood	GTEx

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47674400-47690600	Weak transcription	Gastric	stomach
2	chr1:47675400-47680000	Enhancers	HUVEC	blood vessel
3	chr1:47675800-47680600	Enhancers	Primary hematopoietic stem cells	blood
4	chr1:47676400-47679600	Enhancers	Right Atrium	heart
5	chr1:47676800-47679200	Enhancers	Left Ventricle	heart
6	chr1:47677000-47679200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:47677200-47678800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
8	chr1:47677200-47679000	Bivalent Enhancer	Fetal Muscle Leg	muscle
9	chr1:47677200-47679000	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr1:47677200-47679200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:47677200-47679200	Enhancers	Lung	lung
12	chr1:47677200-47679400	Enhancers	Spleen	Spleen
13	chr1:47677600-47678600	Weak transcription	HMEC	breast
14	chr1:47677600-47679200	Enhancers	Adipose Nuclei	Adipose
15	chr1:47677600-47679600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
16	chr1:47677600-47681800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr1:47677800-47678800	Enhancers	K562	blood
18	chr1:47677800-47681600	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr1:47678000-47679200	Weak transcription	Placenta	Placenta
20	chr1:47678000-47679200	Bivalent Enhancer	HepG2	liver
21	chr1:47678200-47680000	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr1:47678200-47680200	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr1:47678200-47681200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr1:47678200-47681600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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