Variant report

Variant	rs4926725
Chromosome Location	chr1:47679366-47679367
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10789504	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10890471	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211479	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12144626	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12145836	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1543502	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2984618	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34087210	0.82[AMR][1000 genomes]
rs4134058	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926521	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926719	0.80[AMR][1000 genomes]
rs4926726	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61784776	1.00[ASN][1000 genomes]
rs6588196	1.00[ASN][1000 genomes]
rs6658125	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6669341	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6692253	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6695898	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs741959	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs743270	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7545034	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664	0.83[AMR][1000 genomes]
rs977747	0.84[AMR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4926725	RP1-18D14.7	cis	Whole Blood	GTEx
rs4926725	TAL1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47674400-47690600	Weak transcription	Gastric	stomach
2	chr1:47675400-47680000	Enhancers	HUVEC	blood vessel
3	chr1:47675800-47680600	Enhancers	Primary hematopoietic stem cells	blood
4	chr1:47676400-47679600	Enhancers	Right Atrium	heart
5	chr1:47677200-47679400	Enhancers	Spleen	Spleen
6	chr1:47677600-47679600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
7	chr1:47677600-47681800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:47677800-47681600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr1:47678200-47680000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr1:47678200-47680200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr1:47678200-47681200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:47678200-47681600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:47678800-47679600	Flanking Active TSS	K562	blood
14	chr1:47679000-47679400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr1:47679200-47680800	Enhancers	Placenta	Placenta
16	chr1:47679200-47686200	Weak transcription	Left Ventricle	heart
17	chr1:47679200-47687000	Weak transcription	Adipose Nuclei	Adipose
18	chr1:47679200-47689400	Weak transcription	Lung	lung

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