Variant report

Variant	rs4134058
Chromosome Location	chr1:47670911-47670912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:47665745..47667554-chr1:47668799..47671780,2	K562	blood:
2	chr1:47668413..47671273-chr1:47671356..47673006,2	K562	blood:
3	chr1:47654942..47657353-chr1:47669625..47672570,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TAL1-3	chr1:47670392-47672900	NONHSAT003062
2	lnc-TAL1-3	chr1:47670393-47672900	l_51_NR_026878

Variant related genes	Relation type
ENSG00000162366	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10789504	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10890471	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211479	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11211481	0.80[EUR][1000 genomes]
rs12144626	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12145836	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1543502	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2984618	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34087210	0.82[AMR][1000 genomes]
rs4926521	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926524	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926719	0.82[AMR][1000 genomes]
rs4926725	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926726	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61782665	0.80[EUR][1000 genomes]
rs61784776	1.00[ASN][1000 genomes]
rs6588196	1.00[ASN][1000 genomes]
rs6658125	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6669341	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6692253	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6695898	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs741959	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs743270	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525145	0.80[EUR][1000 genomes]
rs7534271	0.80[EUR][1000 genomes]
rs7545034	1.00[ASN][1000 genomes]
rs7664	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs977747	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4134058	RP1-18D14.7	cis	Whole Blood	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47659000-47675800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:47664600-47676000	Weak transcription	K562	blood
3	chr1:47666600-47671600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:47668000-47673200	Weak transcription	HUVEC	blood vessel
5	chr1:47670800-47671400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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