Variant report

Variant	rs10890471
Chromosome Location	chr1:47676525-47676526
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10789504	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11211479	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11211481	0.80[EUR][1000 genomes]
rs12144626	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12145836	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1543502	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2984618	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34087210	0.82[AMR][1000 genomes]
rs4134058	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926521	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926524	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926719	0.82[AMR][1000 genomes]
rs4926725	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926726	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61782665	0.80[EUR][1000 genomes]
rs61784776	1.00[ASN][1000 genomes]
rs6588196	1.00[ASN][1000 genomes]
rs6658125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6669341	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6692253	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6695898	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs741959	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs743270	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525145	0.80[EUR][1000 genomes]
rs7534271	0.80[EUR][1000 genomes]
rs7545034	1.00[ASN][1000 genomes]
rs7664	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs977747	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10890471	RP1-18D14.7	cis	Whole Blood	GTEx

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47673400-47677600	Enhancers	HMEC	breast
2	chr1:47673600-47676600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:47674400-47677200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:47674400-47690600	Weak transcription	Gastric	stomach
5	chr1:47675000-47677200	Weak transcription	Spleen	Spleen
6	chr1:47675200-47676800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:47675400-47677000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:47675400-47680000	Enhancers	HUVEC	blood vessel
9	chr1:47675600-47677400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
10	chr1:47675800-47677400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr1:47675800-47680600	Enhancers	Primary hematopoietic stem cells	blood
12	chr1:47676000-47677800	Genic enhancers	K562	blood
13	chr1:47676000-47678200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:47676000-47678200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr1:47676200-47677200	Enhancers	Adipose Nuclei	Adipose
16	chr1:47676200-47677400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr1:47676400-47676600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr1:47676400-47676600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:47676400-47677200	Weak transcription	Lung	lung
20	chr1:47676400-47677400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:47676400-47677600	Enhancers	Placenta Amnion	Placenta Amnion
22	chr1:47676400-47679600	Enhancers	Right Atrium	heart

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