Variant report

Variant	rs6695898
Chromosome Location	chr1:47681761-47681762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47680569..47683211-chr1:47778576..47780736,2	K562	blood:
2	chr1:47679659..47682263-chr1:47720336..47722266,2	K562	blood:

Variant related genes	Relation type
ENSG00000123473	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1015890	0.80[EUR][1000 genomes]
rs10789504	0.82[EUR][1000 genomes]
rs10890471	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211479	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11211481	0.81[EUR][1000 genomes]
rs12141363	0.80[EUR][1000 genomes]
rs12144626	0.82[EUR][1000 genomes]
rs12145836	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12407157	0.80[EUR][1000 genomes]
rs1543502	0.82[EUR][1000 genomes]
rs2008713	0.80[EUR][1000 genomes]
rs2984618	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34087210	0.81[AMR][1000 genomes]
rs4134058	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926521	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926524	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926725	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926726	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61782665	0.81[EUR][1000 genomes]
rs61784776	1.00[ASN][1000 genomes]
rs6588196	1.00[ASN][1000 genomes]
rs6658125	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6669341	0.82[EUR][1000 genomes]
rs6692253	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6700838	0.81[EUR][1000 genomes]
rs6701381	0.81[EUR][1000 genomes]
rs741959	0.82[EUR][1000 genomes]
rs743270	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525145	0.81[EUR][1000 genomes]
rs7534271	0.81[EUR][1000 genomes]
rs7545034	1.00[ASN][1000 genomes]
rs7664	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs977747	0.81[AMR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6695898	RP1-18D14.7	cis	Whole Blood	GTEx
rs6695898	TAL1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47674400-47690600	Weak transcription	Gastric	stomach
2	chr1:47677600-47681800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:47679200-47686200	Weak transcription	Left Ventricle	heart
4	chr1:47679200-47687000	Weak transcription	Adipose Nuclei	Adipose
5	chr1:47679200-47689400	Weak transcription	Lung	lung
6	chr1:47679400-47684800	Weak transcription	Spleen	Spleen
7	chr1:47679600-47683600	Genic enhancers	K562	blood
8	chr1:47679600-47689000	Weak transcription	Right Atrium	heart
9	chr1:47680600-47685800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr1:47680800-47681800	Weak transcription	Placenta	Placenta
11	chr1:47681200-47684600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:47681400-47682400	Enhancers	Fetal Intestine Large	intestine
13	chr1:47681400-47682400	Enhancers	Fetal Intestine Small	intestine
14	chr1:47681400-47683400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr1:47681600-47681800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr1:47681600-47682600	Flanking Active TSS	HepG2	liver
17	chr1:47681600-47682800	Enhancers	HUVEC	blood vessel
18	chr1:47681600-47683000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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