Variant report

Variant	rs12407157
Chromosome Location	chr1:47707027-47707028
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47705490..47714722-chr1:47717231..47723503,17	K562	blood:
2	chr1:47706169..47709093-chr1:47709485..47711498,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1015890	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10789504	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890472	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11211481	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211482	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12057184	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12083555	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12141363	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144626	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1543502	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1810658	0.84[AMR][1000 genomes]
rs2008713	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2984618	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34087210	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61782665	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6669341	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6695898	0.80[EUR][1000 genomes]
rs6700838	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701381	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs741959	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525145	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7534271	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs765861	1.00[ASN][1000 genomes]
rs7664	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs911910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs977747	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12407157	RP1-18D14.7	cis	Whole Blood	GTEx

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47705200-47766400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:47705600-47766400	Weak transcription	Primary T cells from cord blood	blood
3	chr1:47705800-47709400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:47705800-47714800	Weak transcription	Fetal Thymus	thymus
5	chr1:47706400-47709200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr1:47706800-47707200	Enhancers	Lung	lung
7	chr1:47706800-47707600	Enhancers	Left Ventricle	heart
8	chr1:47706800-47707600	Enhancers	Right Atrium	heart
9	chr1:47706800-47707800	Enhancers	HUVEC	blood vessel
10	chr1:47706800-47708000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr1:47706800-47708200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:47706800-47709800	Enhancers	Spleen	Spleen
13	chr1:47707000-47707200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr1:47707000-47707200	Enhancers	Placenta	Placenta
15	chr1:47707000-47707200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
16	chr1:47707000-47707400	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr1:47707000-47707600	Enhancers	Primary hematopoietic stem cells	blood
18	chr1:47707000-47707600	Bivalent Enhancer	Adipose Nuclei	Adipose
19	chr1:47707000-47707600	Enhancers	Hela-S3	cervix
20	chr1:47707000-47707800	Flanking Active TSS	K562	blood
21	chr1:47707000-47708200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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