Variant report

Variant	rs7664
Chromosome Location	chr1:47682017-47682018
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:47680569..47683211-chr1:47778576..47780736,2	K562	blood:
2	chr1:47679659..47682263-chr1:47720336..47722266,2	K562	blood:
3	chr1:47681818..47683742-chr1:47799081..47801264,3	K562	blood:

Variant related genes	Relation type
ENSG00000123473	Chromatin interaction
ENSG00000162368	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1015890	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10789504	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10890471	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10890472	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211479	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11211480	0.92[CEU][hapmap];0.80[TSI][hapmap]
rs11211481	1.00[CEU][hapmap];0.85[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11211482	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12057184	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12083555	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141363	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12144626	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12407157	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1543502	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1810658	1.00[ASN][1000 genomes]
rs2008713	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2984618	1.00[CEU][hapmap];0.87[GIH][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34087210	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3737771	1.00[JPT][hapmap]
rs4134058	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4926521	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4926524	0.83[AMR][1000 genomes]
rs4926725	0.83[AMR][1000 genomes]
rs4926726	0.82[AMR][1000 genomes]
rs61782665	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6658125	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6669341	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6692253	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6695898	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6700838	1.00[CEU][hapmap];0.85[GIH][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6701381	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72637985	0.81[ASN][1000 genomes]
rs741959	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs743270	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7525145	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7534271	1.00[CEU][hapmap];0.85[GIH][hapmap];0.87[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs911910	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs977747	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs7664	RP1-18D14.7	cis	Whole Blood	GTEx
rs7664	STIL	cis	cerebellum	SCAN
rs7664	CYP4A11	cis	parietal	SCAN
rs7664	MPL	cis	cerebellum	SCAN
rs7664	CMPK1	cis	lymphoblastoid	seeQTL
rs7664	BEST4	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47674400-47690600	Weak transcription	Gastric	stomach
2	chr1:47679200-47686200	Weak transcription	Left Ventricle	heart
3	chr1:47679200-47687000	Weak transcription	Adipose Nuclei	Adipose
4	chr1:47679200-47689400	Weak transcription	Lung	lung
5	chr1:47679400-47684800	Weak transcription	Spleen	Spleen
6	chr1:47679600-47683600	Genic enhancers	K562	blood
7	chr1:47679600-47689000	Weak transcription	Right Atrium	heart
8	chr1:47680600-47685800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr1:47681200-47684600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:47681400-47682400	Enhancers	Fetal Intestine Large	intestine
11	chr1:47681400-47682400	Enhancers	Fetal Intestine Small	intestine
12	chr1:47681400-47683400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr1:47681600-47682600	Flanking Active TSS	HepG2	liver
14	chr1:47681600-47682800	Enhancers	HUVEC	blood vessel
15	chr1:47681600-47683000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:47681800-47682400	Enhancers	Placenta	Placenta
17	chr1:47681800-47682400	Enhancers	Placenta Amnion	Placenta Amnion
18	chr1:47681800-47689600	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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