Variant report

Variant	rs6657163
Chromosome Location	chr1:90837098-90837099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12090317	0.80[AFR][1000 genomes]
rs12092500	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12095022	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57222141	1.00[AMR][1000 genomes]
rs74099403	1.00[AMR][1000 genomes]
rs74099406	1.00[AMR][1000 genomes]
rs74099407	1.00[AMR][1000 genomes]
rs74099412	1.00[AMR][1000 genomes]
rs74099413	1.00[AMR][1000 genomes]
rs74099422	1.00[AMR][1000 genomes]
rs74099428	1.00[AMR][1000 genomes]
rs74099431	1.00[AMR][1000 genomes]
rs74099432	1.00[AMR][1000 genomes]
rs74099434	1.00[AMR][1000 genomes]
rs74099437	1.00[AMR][1000 genomes]
rs74099605	1.00[AMR][1000 genomes]
rs74102642	1.00[AMR][1000 genomes]
rs74102645	1.00[AMR][1000 genomes]
rs7539781	0.89[AFR][1000 genomes]
rs7549917	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000787	chr1:90809476-90874481	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3394726	chr1:90811671-91019675	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1801569	chr1:90819992-90983299	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv1808806	chr1:90819992-90983299	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv1822918	chr1:90819992-90983299	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv1850863	chr1:90819992-90983299	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2757740	chr1:90819992-90983299	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv2758949	chr1:90819992-90983299	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv427697	chr1:90819992-90983299	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv428124	chr1:90819992-90983299	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	esv1811797	chr1:90819992-91008105	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv432487	chr1:90824652-90931765	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90835800-90838000	Enhancers	Dnd41	blood
2	chr1:90836000-90837200	Enhancers	HSMMtube	muscle
3	chr1:90836000-90837200	Enhancers	Osteobl	bone
4	chr1:90836000-90837400	Enhancers	HSMM	muscle
5	chr1:90836200-90837400	Enhancers	NH-A	brain
6	chr1:90836200-90837600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:90836400-90837200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:90836600-90837400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:90836600-90837400	Enhancers	HMEC	breast
10	chr1:90837000-90837200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:90837000-90837400	Bivalent Enhancer	Primary hematopoietic stem cells	blood

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