Variant report

Variant	rs74099403
Chromosome Location	chr1:90708450-90708451
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12092500	1.00[AMR][1000 genomes]
rs12095022	1.00[AMR][1000 genomes]
rs57222141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6657163	1.00[AMR][1000 genomes]
rs74099406	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74099407	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74099412	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74099413	1.00[AMR][1000 genomes]
rs74099422	1.00[AMR][1000 genomes]
rs74099428	1.00[AMR][1000 genomes]
rs74099431	1.00[AMR][1000 genomes]
rs74099432	1.00[AMR][1000 genomes]
rs74099434	1.00[AMR][1000 genomes]
rs74099437	1.00[AMR][1000 genomes]
rs74099605	1.00[AMR][1000 genomes]
rs74102642	1.00[AMR][1000 genomes]
rs74102645	1.00[AMR][1000 genomes]
rs7549917	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546803	chr1:90679734-90777717	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90707400-90710400	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr1:90707800-90708800	Weak transcription	HepG2	liver
3	chr1:90708000-90710000	Weak transcription	Sigmoid Colon	Sigmoid Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links