Variant report

Variant	rs74099413
Chromosome Location	chr1:90757855-90757856
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12092500	1.00[AMR][1000 genomes]
rs12095022	1.00[AMR][1000 genomes]
rs57222141	1.00[AMR][1000 genomes]
rs6657163	1.00[AMR][1000 genomes]
rs74099403	1.00[AMR][1000 genomes]
rs74099406	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74099407	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74099412	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74099422	1.00[AMR][1000 genomes]
rs74099428	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74099431	1.00[AMR][1000 genomes]
rs74099432	1.00[AMR][1000 genomes]
rs74099434	1.00[AMR][1000 genomes]
rs74099437	1.00[AMR][1000 genomes]
rs74099605	1.00[AMR][1000 genomes]
rs74102642	1.00[AMR][1000 genomes]
rs74102645	1.00[AMR][1000 genomes]
rs7549917	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546803	chr1:90679734-90777717	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv524317	chr1:90729744-90836739	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv946065	chr1:90752199-90763787	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90756400-90758200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:90756600-90758000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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