Variant report

Variant	rs74099428
Chromosome Location	chr1:90794425-90794426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12092500	1.00[AMR][1000 genomes]
rs12095022	1.00[AMR][1000 genomes]
rs57222141	1.00[AMR][1000 genomes]
rs6657163	1.00[AMR][1000 genomes]
rs74099403	1.00[AMR][1000 genomes]
rs74099406	1.00[AMR][1000 genomes]
rs74099407	1.00[AMR][1000 genomes]
rs74099412	1.00[AMR][1000 genomes]
rs74099413	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74099422	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74099431	1.00[AMR][1000 genomes]
rs74099432	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74099434	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74099437	1.00[AMR][1000 genomes]
rs74099605	1.00[AMR][1000 genomes]
rs74102642	1.00[AMR][1000 genomes]
rs74102645	1.00[AMR][1000 genomes]
rs7549917	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524317	chr1:90729744-90836739	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv521123	chr1:90770566-90836739	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv870546	chr1:90783440-90816579	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90794400-90794600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:90794400-90795000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links