Variant report

Variant	rs74099412
Chromosome Location	chr1:90746807-90746808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12092500	1.00[AMR][1000 genomes]
rs12095022	1.00[AMR][1000 genomes]
rs57222141	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6657163	1.00[AMR][1000 genomes]
rs74099403	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74099406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74099407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74099413	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74099422	1.00[AMR][1000 genomes]
rs74099428	1.00[AMR][1000 genomes]
rs74099431	1.00[AMR][1000 genomes]
rs74099432	1.00[AMR][1000 genomes]
rs74099434	1.00[AMR][1000 genomes]
rs74099437	1.00[AMR][1000 genomes]
rs74099605	1.00[AMR][1000 genomes]
rs74102642	1.00[AMR][1000 genomes]
rs74102645	1.00[AMR][1000 genomes]
rs7549917	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546803	chr1:90679734-90777717	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv524317	chr1:90729744-90836739	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv946064	chr1:90746594-90749792	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90736200-90752000	Weak transcription	Aorta	Aorta
2	chr1:90742000-90747200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:90746600-90747400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:90746600-90747400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:90746800-90747400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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