The 2.0 version of rSNPBase

Variant report

Variant rs6670429
Chromosome Location chr1:161927885-161927886
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:110 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:161824200-161928400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
2 chr1:161861600-161936000 Weak transcription Fetal Intestine Small intestine
3 chr1:161883400-161928200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr1:161885000-161928000 Weak transcription Fetal Adrenal Gland Adrenal Gland
5 chr1:161887000-161928200 Weak transcription Rectal Mucosa Donor 29 rectum
6 chr1:161887200-161929600 Weak transcription Hela-S3 cervix
7 chr1:161897800-161928400 Weak transcription Cortex derived primary cultured neurospheres brain
8 chr1:161897800-161940000 Weak transcription Brain Germinal Matrix brain
9 chr1:161901400-161935400 Weak transcription Fetal Lung lung
10 chr1:161902800-161943400 Weak transcription Esophagus oesophagus
11 chr1:161903600-161930400 Weak transcription Fetal Brain Female brain
12 chr1:161904800-161956600 Weak transcription Fetal Brain Male brain
13 chr1:161906800-161928000 Weak transcription Stomach Smooth Muscle stomach
14 chr1:161906800-161932200 Weak transcription Stomach Mucosa stomach
15 chr1:161911000-161937200 Weak transcription Gastric stomach
16 chr1:161911600-161939400 Weak transcription HepG2 liver
17 chr1:161912600-161941600 Weak transcription Fetal Kidney kidney
18 chr1:161913600-161928000 Weak transcription Fetal Intestine Large intestine
19 chr1:161913600-161931600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
20 chr1:161914000-161932000 Weak transcription Aorta Aorta
21 chr1:161914800-161928000 Weak transcription Duodenum Mucosa Duodenum
22 chr1:161914800-161928000 Weak transcription Placenta Placenta
23 chr1:161915000-161928400 Weak transcription Breast Myoepithelial Primary Cells Breast
24 chr1:161915000-161930800 Weak transcription HUVEC blood vessel
25 chr1:161915200-161928200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
26 chr1:161916200-161930400 Weak transcription Sigmoid Colon Sigmoid Colon
27 chr1:161916200-161935600 Weak transcription Fetal Muscle Trunk muscle
28 chr1:161916800-161931200 Weak transcription HSMMtube muscle
29 chr1:161917200-161928000 Weak transcription Ovary ovary
30 chr1:161917200-161928000 Weak transcription Spleen Spleen
31 chr1:161919600-161930800 Weak transcription Psoas Muscle Psoas
32 chr1:161922800-161928400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
33 chr1:161923600-161928200 Weak transcription Brain Cingulate Gyrus brain
34 chr1:161923800-161928000 Weak transcription GM12878-XiMat blood
35 chr1:161924000-161931000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
36 chr1:161924200-161928000 Weak transcription Primary neutrophils fromperipheralblood blood
37 chr1:161924200-161928000 Weak transcription Fetal Thymus thymus
38 chr1:161924200-161928200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
39 chr1:161924200-161931600 Weak transcription Brain Anterior Caudate brain
40 chr1:161924200-161932200 Weak transcription Brain Angular Gyrus brain
41 chr1:161924400-161928000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
42 chr1:161924400-161928400 Weak transcription Brain Hippocampus Middle brain
43 chr1:161924400-161930800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr1:161924400-161931800 Weak transcription A549 lung
45 chr1:161924600-161928000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr1:161924600-161928200 Weak transcription Primary hematopoietic stem cells short term culture blood
47 chr1:161924600-161928200 Weak transcription Primary T helper cells PMA-I stimulated --
48 chr1:161924600-161928200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr1:161924600-161931600 Weak transcription Primary T helper naive cells from peripheral blood blood
50 chr1:161924600-161931600 Weak transcription Primary T killer memory cells from peripheral blood blood

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Last update: Aug 31, 2015