The 2.0 version of rSNPBase

Variant report

Variant rs6695574
Chromosome Location chr1:161928002-161928003
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:161824200-161928400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
2 chr1:161861600-161936000 Weak transcription Fetal Intestine Small intestine
3 chr1:161883400-161928200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr1:161887000-161928200 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr1:161887200-161929600 Weak transcription Hela-S3 cervix
6 chr1:161897800-161928400 Weak transcription Cortex derived primary cultured neurospheres brain
7 chr1:161897800-161940000 Weak transcription Brain Germinal Matrix brain
8 chr1:161901400-161935400 Weak transcription Fetal Lung lung
9 chr1:161902800-161943400 Weak transcription Esophagus oesophagus
10 chr1:161903600-161930400 Weak transcription Fetal Brain Female brain
11 chr1:161904800-161956600 Weak transcription Fetal Brain Male brain
12 chr1:161906800-161932200 Weak transcription Stomach Mucosa stomach
13 chr1:161911000-161937200 Weak transcription Gastric stomach
14 chr1:161911600-161939400 Weak transcription HepG2 liver
15 chr1:161912600-161941600 Weak transcription Fetal Kidney kidney
16 chr1:161913600-161931600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr1:161914000-161932000 Weak transcription Aorta Aorta
18 chr1:161915000-161928400 Weak transcription Breast Myoepithelial Primary Cells Breast
19 chr1:161915000-161930800 Weak transcription HUVEC blood vessel
20 chr1:161915200-161928200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
21 chr1:161916200-161930400 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr1:161916200-161935600 Weak transcription Fetal Muscle Trunk muscle
23 chr1:161916800-161931200 Weak transcription HSMMtube muscle
24 chr1:161919600-161930800 Weak transcription Psoas Muscle Psoas
25 chr1:161922800-161928400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
26 chr1:161923600-161928200 Weak transcription Brain Cingulate Gyrus brain
27 chr1:161924000-161931000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
28 chr1:161924200-161928200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
29 chr1:161924200-161931600 Weak transcription Brain Anterior Caudate brain
30 chr1:161924200-161932200 Weak transcription Brain Angular Gyrus brain
31 chr1:161924400-161928400 Weak transcription Brain Hippocampus Middle brain
32 chr1:161924400-161930800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
33 chr1:161924400-161931800 Weak transcription A549 lung
34 chr1:161924600-161928200 Weak transcription Primary hematopoietic stem cells short term culture blood
35 chr1:161924600-161928200 Weak transcription Primary T helper cells PMA-I stimulated --
36 chr1:161924600-161928200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr1:161924600-161931600 Weak transcription Primary T helper naive cells from peripheral blood blood
38 chr1:161924600-161931600 Weak transcription Primary T killer memory cells from peripheral blood blood
39 chr1:161924600-161931600 Weak transcription Brain Substantia Nigra brain
40 chr1:161924600-161931600 Weak transcription Small Intestine intestine
41 chr1:161924600-161932000 Weak transcription Primary T killer naive cells fromperipheralblood blood
42 chr1:161925000-161928400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr1:161925000-161928400 Weak transcription HSMM muscle
44 chr1:161925000-161931400 Weak transcription Rectal Smooth Muscle rectum
45 chr1:161925000-161937600 Weak transcription Pancreatic Islets Pancreatic Islet
46 chr1:161925400-161931600 Weak transcription Colon Smooth Muscle Colon
47 chr1:161925400-161932200 Strong transcription Primary B cells from peripheral blood blood
48 chr1:161925600-161930200 Weak transcription Lung lung
49 chr1:161925600-161931600 Strong transcription Monocytes-CD14+_RO01746 blood
50 chr1:161925800-161928200 Weak transcription Left Ventricle heart

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Last update: Aug 31, 2015