The 2.0 version of rSNPBase

Variant report

Variant rs12562272
Chromosome Location chr1:161916140-161916141
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:161824200-161928400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
2 chr1:161861600-161936000 Weak transcription Fetal Intestine Small intestine
3 chr1:161883400-161928200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr1:161884600-161927600 Weak transcription NHEK skin
5 chr1:161884800-161922600 Weak transcription Brain Anterior Caudate brain
6 chr1:161885000-161928000 Weak transcription Fetal Adrenal Gland Adrenal Gland
7 chr1:161885800-161919200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr1:161887000-161918600 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr1:161887000-161928200 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr1:161887200-161929600 Weak transcription Hela-S3 cervix
11 chr1:161896200-161916400 Weak transcription Fetal Stomach stomach
12 chr1:161897800-161928400 Weak transcription Cortex derived primary cultured neurospheres brain
13 chr1:161897800-161940000 Weak transcription Brain Germinal Matrix brain
14 chr1:161899800-161918400 Weak transcription Skeletal Muscle Male skeletal muscle
15 chr1:161900200-161918600 Weak transcription Rectal Smooth Muscle rectum
16 chr1:161901400-161935400 Weak transcription Fetal Lung lung
17 chr1:161902400-161923000 Weak transcription Brain Substantia Nigra brain
18 chr1:161902800-161943400 Weak transcription Esophagus oesophagus
19 chr1:161903600-161930400 Weak transcription Fetal Brain Female brain
20 chr1:161903800-161918800 Weak transcription Pancreatic Islets Pancreatic Islet
21 chr1:161903800-161923800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr1:161904400-161923200 Weak transcription Brain Cingulate Gyrus brain
23 chr1:161904800-161956600 Weak transcription Fetal Brain Male brain
24 chr1:161905000-161920600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr1:161906000-161923200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
26 chr1:161906000-161923200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
27 chr1:161906000-161927800 Weak transcription Thymus Thymus
28 chr1:161906800-161918000 Weak transcription Primary T killer memory cells from peripheral blood blood
29 chr1:161906800-161923200 Weak transcription Primary T killer naive cells fromperipheralblood blood
30 chr1:161906800-161928000 Weak transcription Stomach Smooth Muscle stomach
31 chr1:161906800-161932200 Weak transcription Stomach Mucosa stomach
32 chr1:161907000-161919200 Weak transcription Brain Hippocampus Middle brain
33 chr1:161907000-161923200 Weak transcription Primary T helper naive cells from peripheral blood blood
34 chr1:161910600-161922600 Weak transcription Brain Angular Gyrus brain
35 chr1:161911000-161937200 Weak transcription Gastric stomach
36 chr1:161911400-161917000 Strong transcription Monocytes-CD14+_RO01746 blood
37 chr1:161911400-161919400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr1:161911600-161923800 Weak transcription Small Intestine intestine
39 chr1:161911600-161939400 Weak transcription HepG2 liver
40 chr1:161911800-161916200 Strong transcription Primary T helper cells fromperipheralblood blood
41 chr1:161912000-161916200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
42 chr1:161912400-161923400 Weak transcription Fetal Thymus thymus
43 chr1:161912600-161923400 Weak transcription Primary T cells fromperipheralblood blood
44 chr1:161912600-161941600 Weak transcription Fetal Kidney kidney
45 chr1:161912800-161927800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr1:161913400-161916200 Strong transcription Sigmoid Colon Sigmoid Colon
47 chr1:161913600-161928000 Weak transcription Fetal Intestine Large intestine
48 chr1:161913600-161931600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
49 chr1:161914000-161932000 Weak transcription Aorta Aorta
50 chr1:161914200-161916200 Strong transcription Primary T cells from cord blood blood

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Last update: Aug 31, 2015