The 2.0 version of rSNPBase

Variant report

Variant rs16827987
Chromosome Location chr1:161905792-161905793
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:161824200-161928400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
2 chr1:161861600-161906400 Weak transcription Stomach Smooth Muscle stomach
3 chr1:161861600-161936000 Weak transcription Fetal Intestine Small intestine
4 chr1:161881600-161912000 Weak transcription Aorta Aorta
5 chr1:161883200-161916000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr1:161883400-161928200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr1:161884200-161910800 Weak transcription HepG2 liver
8 chr1:161884600-161927600 Weak transcription NHEK skin
9 chr1:161884800-161922600 Weak transcription Brain Anterior Caudate brain
10 chr1:161885000-161910600 Weak transcription Gastric stomach
11 chr1:161885000-161914400 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr1:161885000-161928000 Weak transcription Fetal Adrenal Gland Adrenal Gland
13 chr1:161885200-161911800 Weak transcription Left Ventricle heart
14 chr1:161885400-161906200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr1:161885800-161919200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr1:161886000-161905800 Weak transcription Adipose Nuclei Adipose
17 chr1:161886000-161910600 Weak transcription K562 blood
18 chr1:161886000-161911600 Weak transcription Brain Inferior Temporal Lobe brain
19 chr1:161886000-161911800 Weak transcription Placenta Placenta
20 chr1:161886000-161912000 Weak transcription Lung lung
21 chr1:161886000-161912000 Weak transcription Pancreas Pancrea
22 chr1:161886200-161912000 Weak transcription Fetal Intestine Large intestine
23 chr1:161887000-161918600 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr1:161887000-161928200 Weak transcription Rectal Mucosa Donor 29 rectum
25 chr1:161887200-161906600 Weak transcription ES-I3 Cell Line embryonic stem cell
26 chr1:161887200-161914200 Weak transcription Duodenum Mucosa Duodenum
27 chr1:161887200-161915600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
28 chr1:161887200-161929600 Weak transcription Hela-S3 cervix
29 chr1:161891000-161912800 Weak transcription Fetal Muscle Leg muscle
30 chr1:161891000-161915600 Weak transcription Fetal Muscle Trunk muscle
31 chr1:161891400-161906400 Weak transcription Brain Hippocampus Middle brain
32 chr1:161891800-161915800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr1:161896200-161916400 Weak transcription Fetal Stomach stomach
34 chr1:161896600-161911800 Weak transcription Primary neutrophils fromperipheralblood blood
35 chr1:161896800-161909200 Weak transcription Breast Myoepithelial Primary Cells Breast
36 chr1:161897800-161928400 Weak transcription Cortex derived primary cultured neurospheres brain
37 chr1:161897800-161940000 Weak transcription Brain Germinal Matrix brain
38 chr1:161899400-161914400 Weak transcription Psoas Muscle Psoas
39 chr1:161899800-161918400 Weak transcription Skeletal Muscle Male skeletal muscle
40 chr1:161900000-161910600 Weak transcription Ovary ovary
41 chr1:161900000-161914200 Weak transcription Skeletal Muscle Female skeletal muscle
42 chr1:161900000-161916000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
43 chr1:161900200-161918600 Weak transcription Rectal Smooth Muscle rectum
44 chr1:161900600-161911600 Weak transcription NH-A brain
45 chr1:161900600-161914000 Weak transcription HUVEC blood vessel
46 chr1:161900600-161915600 Weak transcription HSMM muscle
47 chr1:161900600-161915600 Weak transcription NHLF lung
48 chr1:161900800-161909400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
49 chr1:161901400-161935400 Weak transcription Fetal Lung lung
50 chr1:161901800-161906800 Enhancers Primary T killer naive cells fromperipheralblood blood

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Last update: Aug 31, 2015