The 2.0 version of rSNPBase

Variant report

Variant rs6672493
Chromosome Location chr1:150586623-150586624
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:150553200-150592000 Weak transcription Fetal Kidney kidney
2 chr1:150573400-150587800 Weak transcription Brain Germinal Matrix brain
3 chr1:150576200-150591000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr1:150577000-150588400 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr1:150577400-150587800 Weak transcription Esophagus oesophagus
6 chr1:150578000-150592600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr1:150581600-150587000 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr1:150582200-150586800 Enhancers Left Ventricle heart
9 chr1:150582200-150587800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr1:150582200-150588800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
11 chr1:150582400-150588800 Enhancers Primary T helper cells fromperipheralblood blood
12 chr1:150582400-150594400 Weak transcription Ovary ovary
13 chr1:150582600-150591800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
14 chr1:150582800-150587800 Weak transcription Fetal Brain Male brain
15 chr1:150583000-150587000 Enhancers Primary B cells from peripheral blood blood
16 chr1:150583000-150587600 Enhancers Primary Natural Killer cells fromperipheralblood blood
17 chr1:150583000-150588000 Flanking Active TSS Primary neutrophils fromperipheralblood blood
18 chr1:150583200-150586800 Enhancers Primary T killer naive cells fromperipheralblood blood
19 chr1:150583200-150586800 Enhancers Pancreas Pancrea
20 chr1:150583200-150588000 Genic enhancers Fetal Intestine Small intestine
21 chr1:150583200-150589000 Enhancers Primary T helper naive cells from peripheral blood blood
22 chr1:150583400-150588200 Enhancers Sigmoid Colon Sigmoid Colon
23 chr1:150583600-150588000 Enhancers Liver Liver
24 chr1:150583800-150586800 Enhancers Brain Cingulate Gyrus brain
25 chr1:150583800-150586800 Enhancers Spleen Spleen
26 chr1:150584000-150587000 Enhancers Skeletal Muscle Male skeletal muscle
27 chr1:150584000-150588600 Strong transcription Fetal Brain Female brain
28 chr1:150584200-150586800 Genic enhancers Fetal Adrenal Gland Adrenal Gland
29 chr1:150584200-150587000 Enhancers Skeletal Muscle Female skeletal muscle
30 chr1:150584200-150587600 Weak transcription Fetal Lung lung
31 chr1:150584400-150588600 Enhancers Rectal Mucosa Donor 31 rectum
32 chr1:150584400-150594800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
33 chr1:150584400-150600600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
34 chr1:150584600-150586800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr1:150584600-150586800 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
36 chr1:150584600-150588200 Strong transcription HUES6 Cell Line embryonic stem cell
37 chr1:150584600-150589400 Weak transcription Brain Anterior Caudate brain
38 chr1:150584800-150587200 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr1:150584800-150587600 Weak transcription ES-I3 Cell Line embryonic stem cell
40 chr1:150584800-150587600 Weak transcription iPS-15b Cell Line embryonic stem cell
41 chr1:150584800-150587800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
42 chr1:150584800-150589600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
43 chr1:150584800-150591400 Weak transcription Right Ventricle heart
44 chr1:150584800-150591600 Weak transcription Rectal Smooth Muscle rectum
45 chr1:150584800-150594400 Weak transcription Gastric stomach
46 chr1:150584800-150596200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
47 chr1:150584800-150600200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr1:150585000-150600000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
49 chr1:150585200-150586800 Flanking Active TSS GM12878-XiMat blood
50 chr1:150585200-150586800 Flanking Active TSS Hela-S3 cervix

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Last update: Aug 31, 2015