The 2.0 version of rSNPBase

Variant report

Variant rs667680
Chromosome Location chr1:93693007-93693008
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:93647000-93756400 Weak transcription Gastric stomach
2 chr1:93647200-93707400 Weak transcription Duodenum Smooth Muscle Duodenum
3 chr1:93647200-93757600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
4 chr1:93647600-93706600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr1:93654200-93708400 Weak transcription Esophagus oesophagus
6 chr1:93654600-93708000 Weak transcription Ovary ovary
7 chr1:93657600-93708400 Weak transcription Left Ventricle heart
8 chr1:93660600-93705200 Weak transcription Lung lung
9 chr1:93661400-93708200 Weak transcription Fetal Muscle Trunk muscle
10 chr1:93661800-93702800 Weak transcription Fetal Heart heart
11 chr1:93661800-93708200 Weak transcription Fetal Brain Female brain
12 chr1:93663600-93705600 Weak transcription Skeletal Muscle Female skeletal muscle
13 chr1:93665400-93708400 Weak transcription Breast Myoepithelial Primary Cells Breast
14 chr1:93665400-93708400 Weak transcription Spleen Spleen
15 chr1:93665600-93697600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr1:93665600-93702600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr1:93665600-93707800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr1:93665800-93693200 Weak transcription Fetal Intestine Small intestine
19 chr1:93665800-93706600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
20 chr1:93665800-93707800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr1:93666600-93727000 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr1:93667400-93695400 Strong transcription HUES48 Cell Line embryonic stem cell
23 chr1:93668800-93695200 Weak transcription Rectal Mucosa Donor 29 rectum
24 chr1:93668800-93697600 Weak transcription Fetal Intestine Large intestine
25 chr1:93668800-93708400 Weak transcription Duodenum Mucosa Duodenum
26 chr1:93672200-93693200 Strong transcription iPS-20b Cell Line embryonic stem cell
27 chr1:93672600-93708400 Weak transcription Placenta Placenta
28 chr1:93673800-93707400 Weak transcription A549 lung
29 chr1:93678000-93695200 Strong transcription HUES6 Cell Line embryonic stem cell
30 chr1:93682000-93704000 Weak transcription Psoas Muscle Psoas
31 chr1:93682400-93708800 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr1:93684000-93703200 Weak transcription Hela-S3 cervix
33 chr1:93684600-93702600 Weak transcription Fetal Adrenal Gland Adrenal Gland
34 chr1:93684800-93708400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
35 chr1:93685200-93702800 Weak transcription iPS-15b Cell Line embryonic stem cell
36 chr1:93685200-93705400 Weak transcription H9 Cell Line embryonic stem cell
37 chr1:93685200-93707400 Weak transcription Cortex derived primary cultured neurospheres brain
38 chr1:93685400-93693800 Weak transcription Liver Liver
39 chr1:93685400-93697000 Strong transcription Primary hematopoietic stem cells short term culture blood
40 chr1:93685400-93700200 Weak transcription Primary T cells fromperipheralblood blood
41 chr1:93685400-93708400 Weak transcription Primary T killer naive cells fromperipheralblood blood
42 chr1:93685600-93708400 Weak transcription NH-A brain
43 chr1:93685600-93709200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
44 chr1:93685800-93695200 Strong transcription Fetal Thymus thymus
45 chr1:93685800-93696400 Weak transcription Primary T helper cells fromperipheralblood blood
46 chr1:93686600-93696200 Strong transcription HUES64 Cell Line embryonic stem cell
47 chr1:93686600-93696400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr1:93686600-93697400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
49 chr1:93686600-93702600 Weak transcription Adipose Nuclei Adipose
50 chr1:93686600-93705000 Weak transcription Muscle Satellite Cultured Cells --

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Last update: Aug 31, 2015