Variant report

Variant	rs6687069
Chromosome Location	chr1:211169973-211169974
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10863872	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10863873	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11119654	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11119668	0.87[EUR][1000 genomes]
rs12022715	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12022739	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12027535	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12039302	0.81[ASN][1000 genomes]
rs12043937	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12043952	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12046391	0.83[ASN][1000 genomes]
rs12070402	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12403500	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12406562	0.82[ASN][1000 genomes]
rs1501544	0.82[ASN][1000 genomes]
rs1501545	0.82[ASN][1000 genomes]
rs1501548	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1501549	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1501550	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1532682	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56999636	0.82[ASN][1000 genomes]
rs58255417	0.89[EUR][1000 genomes]
rs61849015	0.81[ASN][1000 genomes]
rs61849024	0.82[ASN][1000 genomes]
rs61850228	0.92[EUR][1000 genomes]
rs6540638	0.83[ASN][1000 genomes]
rs6540648	0.89[EUR][1000 genomes]
rs6659020	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6659135	0.83[ASN][1000 genomes]
rs6663672	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6666287	0.81[ASN][1000 genomes]
rs6666342	0.87[EUR][1000 genomes]
rs6680997	0.83[ASN][1000 genomes]
rs6689715	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7515316	0.86[AMR][1000 genomes]
rs7518841	0.83[ASN][1000 genomes]
rs7523929	0.85[ASN][1000 genomes]
rs7529625	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7537597	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7551412	0.82[ASN][1000 genomes]
rs7553997	0.83[ASN][1000 genomes]
rs7554723	0.81[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211152800-211183400	Weak transcription	HSMMtube	muscle
2	chr1:211163800-211179400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:211168000-211180600	Weak transcription	HSMM	muscle
4	chr1:211168000-211181600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:211169400-211170200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links