The 2.0 version of rSNPBase

Variant report

Variant rs6688844
Chromosome Location chr1:180259561-180259562
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180240800-180264000 Weak transcription Small Intestine intestine
2 chr1:180240800-180270800 Weak transcription NHLF lung
3 chr1:180241000-180259600 Weak transcription NH-A brain
4 chr1:180242000-180268400 Weak transcription NHDF-Ad bronchial
5 chr1:180243800-180268200 Weak transcription Pancreas Pancrea
6 chr1:180244200-180263000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr1:180244200-180270400 Weak transcription Muscle Satellite Cultured Cells --
8 chr1:180244200-180278200 Weak transcription HSMMtube muscle
9 chr1:180245000-180259800 Weak transcription Colonic Mucosa Colon
10 chr1:180245200-180261600 Weak transcription Right Ventricle heart
11 chr1:180245200-180282400 Weak transcription Fetal Intestine Large intestine
12 chr1:180245400-180268200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
13 chr1:180245400-180280400 Weak transcription Duodenum Smooth Muscle Duodenum
14 chr1:180246800-180264200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr1:180247600-180262000 Weak transcription Aorta Aorta
16 chr1:180247800-180260000 Weak transcription HUES48 Cell Line embryonic stem cell
17 chr1:180247800-180263800 Weak transcription H9 Cell Line embryonic stem cell
18 chr1:180247800-180284200 Weak transcription Fetal Thymus thymus
19 chr1:180248000-180263000 Weak transcription Fetal Intestine Small intestine
20 chr1:180248000-180263800 Weak transcription Placenta Placenta
21 chr1:180248000-180266800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
22 chr1:180248800-180276400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
23 chr1:180249000-180260400 Weak transcription HUVEC blood vessel
24 chr1:180250400-180279800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
25 chr1:180250600-180261800 Weak transcription Lung lung
26 chr1:180250600-180278600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr1:180251800-180260000 Weak transcription Monocytes-CD14+_RO01746 blood
28 chr1:180252000-180260000 Weak transcription Rectal Mucosa Donor 29 rectum
29 chr1:180254400-180280400 Weak transcription Fetal Stomach stomach
30 chr1:180254600-180266200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr1:180254800-180282400 Weak transcription Fetal Muscle Leg muscle
32 chr1:180256000-180260000 Weak transcription Primary neutrophils fromperipheralblood blood
33 chr1:180256400-180261800 Weak transcription Primary hematopoietic stem cells blood
34 chr1:180256400-180262400 Weak transcription Esophagus oesophagus
35 chr1:180256800-180260600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr1:180257200-180259800 Enhancers Fetal Heart heart
37 chr1:180257400-180260000 Weak transcription Liver Liver
38 chr1:180257400-180261800 Weak transcription Primary B cells from peripheral blood blood
39 chr1:180257400-180265400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
40 chr1:180257400-180278200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr1:180257400-180278600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr1:180257600-180259600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
43 chr1:180257600-180264800 Weak transcription Dnd41 blood
44 chr1:180257600-180268000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr1:180257600-180268400 Weak transcription HSMM muscle
46 chr1:180257600-180270600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
47 chr1:180257600-180289600 Weak transcription Hela-S3 cervix
48 chr1:180257800-180259600 Weak transcription Primary monocytes fromperipheralblood blood
49 chr1:180257800-180259600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
50 chr1:180257800-180259800 Weak transcription GM12878-XiMat blood

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Last update: Aug 31, 2015