The 2.0 version of rSNPBase

Variant report

Variant rs6700986
Chromosome Location chr1:180421538-180421539
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180379000-180430800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
2 chr1:180392600-180446200 Weak transcription K562 blood
3 chr1:180401400-180430400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr1:180403400-180426200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr1:180403400-180431200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr1:180403400-180448000 Weak transcription HMEC breast
7 chr1:180404000-180421800 Weak transcription iPS-18 Cell Line embryonic stem cell
8 chr1:180404200-180431800 Weak transcription NHEK skin
9 chr1:180404400-180469000 Weak transcription Pancreas Pancrea
10 chr1:180413000-180429400 Weak transcription Fetal Intestine Small intestine
11 chr1:180417600-180431200 Weak transcription Primary T regulatory cells fromperipheralblood blood
12 chr1:180418000-180431200 Weak transcription Primary T helper naive cells fromperipheralblood blood
13 chr1:180418400-180422000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
14 chr1:180418400-180430800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr1:180418800-180422600 Weak transcription Liver Liver
16 chr1:180419000-180426200 Weak transcription Dnd41 blood
17 chr1:180419400-180421600 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
18 chr1:180419800-180422600 Weak transcription Placenta Amnion Placenta Amnion
19 chr1:180420000-180422200 ZNF genes & repeats Primary T cells from cord blood blood
20 chr1:180420000-180422400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
21 chr1:180420200-180421600 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
22 chr1:180420600-180421600 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr1:180420600-180421600 ZNF genes & repeats Fetal Brain Female brain
24 chr1:180420600-180429600 Weak transcription Fetal Lung lung
25 chr1:180420800-180422200 ZNF genes & repeats Primary hematopoietic stem cells blood
26 chr1:180421000-180429000 Weak transcription Brain Substantia Nigra brain
27 chr1:180421000-180430400 Weak transcription Primary B cells from cord blood blood
28 chr1:180421000-180430600 Weak transcription Brain Anterior Caudate brain
29 chr1:180421000-180431200 Weak transcription Rectal Mucosa Donor 31 rectum
30 chr1:180421000-180431800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
31 chr1:180421000-180448000 Weak transcription HSMM muscle
32 chr1:180421200-180421600 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
33 chr1:180421200-180421600 ZNF genes & repeats Ovary ovary
34 chr1:180421200-180426200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr1:180421200-180426400 Weak transcription GM12878-XiMat blood
36 chr1:180421200-180427200 Weak transcription Primary T killer naive cells fromperipheralblood blood
37 chr1:180421200-180429400 Weak transcription Cortex derived primary cultured neurospheres brain
38 chr1:180421200-180430200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr1:180421200-180431200 Weak transcription iPS-20b Cell Line embryonic stem cell
40 chr1:180421200-180431200 Weak transcription Duodenum Smooth Muscle Duodenum
41 chr1:180421200-180431400 Weak transcription Monocytes-CD14+_RO01746 blood
42 chr1:180421200-180431800 Weak transcription A549 lung
43 chr1:180421200-180451600 Weak transcription Muscle Satellite Cultured Cells --
44 chr1:180421400-180425600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr1:180421400-180425600 Weak transcription Primary T helper cells fromperipheralblood blood
46 chr1:180421400-180431000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015