Variant report

Variant	rs3806301
Chromosome Location	chr1:180472298-180472299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:303)
CpG islands
(count:61)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:303 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr1:180471121-180472604	A549	lung:	n/a	chr1:180471962-180471971 chr1:180471962-180471972 chr1:180471558-180471571 chr1:180471964-180471978 chr1:180471961-180471972
2	ELK1	chr1:180471718-180472511	K562	blood:	n/a	n/a
3	FOXA1	chr1:180472110-180472637	HepG2	liver:	n/a	n/a
4	POU2F2	chr1:180471167-180472358	GM12891	blood:	n/a	n/a
5	TAF1	chr1:180471057-180472385	ECC-1	luminal epithelium:	n/a	n/a
6	POLR2A	chr1:180471178-180472349	HepG2	liver:	n/a	n/a
7	POLR2A	chr1:180471108-180472708	HCT-116	colon:	n/a	n/a
8	TCF12	chr1:180470984-180472590	A549	lung:	n/a	chr1:180472228-180472235
9	POLR2A	chr1:180471266-180472720	K562	blood:	n/a	n/a
10	TCF7L2	chr1:180471096-180472758	Hela-S3	cervix:	n/a	n/a
11	PAX5	chr1:180471191-180472384	GM12878	blood:	n/a	n/a
12	POLR2A	chr1:180470958-180472516	GM12892	blood:	n/a	n/a
13	MAZ	chr1:180471157-180472383	GM12878	blood:	n/a	chr1:180471542-180471551
14	PML	chr1:180471053-180472407	GM12878	blood:	n/a	n/a
15	POLR2A	chr1:180470976-180472431	GM12891	blood:	n/a	n/a
16	CEBPD	chr1:180471464-180472417	K562	blood:	n/a	n/a
17	POLR2A	chr1:180471069-180472353	ECC-1	luminal epithelium:	n/a	n/a
18	TAF1	chr1:180471400-180472416	GM12878	blood:	n/a	n/a
19	POLR2A	chr1:180471124-180472614	GM15510	blood:	n/a	n/a
20	MAX	chr1:180471019-180472842	HepG2	liver:	n/a	chr1:180471542-180471551 chr1:180472613-180472622
21	ATF2	chr1:180471550-180472661	GM12878	blood:	n/a	n/a
22	BCL3	chr1:180471571-180472321	A549	lung:	n/a	chr1:180471776-180471789 chr1:180471811-180471824
23	STAT1	chr1:180471238-180472298	GM12878	blood:	n/a	n/a
24	POLR2A	chr1:180471062-180472713	K562	blood:	n/a	n/a
25	PML	chr1:180471208-180472671	K562	blood:	n/a	n/a
26	MAX	chr1:180471155-180472305	HepG2	liver:	n/a	chr1:180471542-180471551
27	USF2	chr1:180471302-180472311	GM12878	blood:	n/a	chr1:180471536-180471557 chr1:180471542-180471551 chr1:180471540-180471553 chr1:180471542-180471551 chr1:180471541-180471552 chr1:180471543-180471552
28	POLR2A	chr1:180471204-180472427	GM18526	blood:	n/a	n/a
29	ZNF384	chr1:180471854-180472428	GM12878	blood:	n/a	n/a
30	TAL1	chr1:180471380-180472369	K562	blood:	n/a	n/a
31	RUNX3	chr1:180471166-180472678	GM12878	blood:	n/a	n/a
32	JUN	chr1:180471549-180472304	K562	blood:	n/a	chr1:180472170-180472181
33	POLR2A	chr1:180471062-180472404	IMR90	lung:	n/a	n/a
34	TBP	chr1:180471024-180472964	Hela-S3	cervix:	n/a	n/a
35	EP300	chr1:180471098-180472413	ECC-1	luminal epithelium:	n/a	n/a
36	MAFK	chr1:180471301-180472616	K562	blood:	n/a	n/a
37	FOXA2	chr1:180472193-180472622	HepG2	liver:	n/a	n/a
38	GABPA	chr1:180471483-180472885	HL-60	blood:	n/a	chr1:180471809-180471823
39	GABPA	chr1:180470962-180472801	MCF-7	breast:	n/a	chr1:180471809-180471823
40	TEAD4	chr1:180471306-180472302	ECC-1	luminal epithelium:	n/a	n/a
41	TAF1	chr1:180471068-180472470	ECC-1	luminal epithelium:	n/a	n/a
42	BHLHE40	chr1:180471000-180472525	K562	blood:	n/a	chr1:180471536-180471557 chr1:180471542-180471551 chr1:180471540-180471553 chr1:180471542-180471551 chr1:180471543-180471552
43	POLR2A	chr1:180471004-180472381	PANC-1	pancreas:	n/a	n/a
44	POLR2A	chr1:180470946-180472536	SK-N-MC	brain:	n/a	n/a
45	TBP	chr1:180471072-180472298	H1-hESC	embryonic stem cell:	n/a	n/a
46	MYC	chr1:180471203-180472858	K562	blood:	n/a	chr1:180471542-180471551 chr1:180472613-180472622
47	POLR2A	chr1:180471001-180472888	GM12891	blood:	n/a	n/a
48	BRCA1	chr1:180471927-180472563	GM12878	blood:	n/a	n/a
49	MYC	chr1:180471590-180472341	MCF10A-Er-Src	breast:	n/a	n/a
50	POLR2A	chr1:180470947-180472549	GM12892	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:180472298-180472348	HAEpiC	amniotic membrane:	n/a
2	chr1:180472298-180472348	Hela-S3	cervix:	n/a
3	chr1:180472298-180472348	GM12878	blood:	n/a
4	chr1:180472298-180472348	HepG2	liver:	n/a
5	chr1:180472298-180472348	Jurkat	blood:	n/a
6	chr1:180472298-180472348	ECC-1	luminal epithelium:	n/a
7	chr1:180472298-180472348	K562	blood:	n/a
8	chr1:180472298-180472348	PFSK-1	brain:	n/a
9	chr1:180472298-180472348	A549	lung:	n/a
10	chr1:180472298-180472348	AG09309	skin:	n/a
11	chr1:180472298-180472348	MCF-7	breast:	n/a
12	chr1:180472298-180472348	NH-A	brain:	n/a
13	chr1:180472298-180472348	AG09319	gingival:	n/a
14	chr1:180472298-180472348	HIPEpiC	eye:	n/a
15	chr1:180472298-180472348	NHBE	bronchial:	n/a
16	chr1:180472298-180472348	HL-60	blood:	n/a
17	chr1:180472298-180472348	CMK	blood:	n/a
18	chr1:180472298-180472348	PrEC	prostate:	n/a
19	chr1:180472298-180472348	AG04449	skin:	fetal
20	chr1:180472298-180472348	IMR90	lung:	fetal
21	chr1:180472298-180472348	HUVEC	blood vessel:	n/a
22	chr1:180472298-180472348	RPTEC	kidney:	n/a
23	chr1:180472298-180472348	LNCaP	prostate:	n/a
24	chr1:180472298-180472348	U87	brain:	n/a
25	chr1:180472298-180472348	SAEC	small airway:	n/a
26	chr1:180472298-180472348	MCF10A-Er-Src	breast:	n/a
27	chr1:180472298-180472348	SK-N-MC	brain:	n/a
28	chr1:180472298-180472348	HRCEpiC	kidney:	n/a
29	chr1:180472298-180472348	GM12892	blood:	n/a
30	chr1:180472298-180472348	HPAEpiC	pulmonary alveolar:	n/a
31	chr1:180472298-180472348	AG10803	skin:	n/a
32	chr1:180472298-180472348	HCM	heart:	n/a
33	chr1:180472298-180472348	HMEC	breast:	n/a
34	chr1:180472298-180472348	NB4	blood:	n/a
35	chr1:180472298-180472348	BE2_C	brain:	n/a
36	chr1:180472298-180472348	BJ	skin:	n/a
37	chr1:180472298-180472348	HCF	heart:	n/a
38	chr1:180472298-180472348	HEEpiC	esophagus:	n/a
39	chr1:180472298-180472348	GM06990	blood:	n/a
40	chr1:180472298-180472348	HNPCEpiC	eye:	n/a
41	chr1:180472298-180472348	ProgFib	skin:	n/a
42	chr1:180472298-180472348	AG04450	lung:	fetal
43	chr1:180472298-180472348	SK-N-SH_RA	brain:	n/a
44	chr1:180472298-180472348	Caco-2	colon:	n/a
45	chr1:180472298-180472348	ovcar-3	ovarian:	n/a
46	chr1:180472298-180472348	HRPEpiC	eye:	n/a
47	chr1:180472298-180472348	HCT-116	colon:	n/a
48	chr1:180472298-180472348	PANC-1	pancreas:	n/a
49	chr1:180472298-180472348	AoSMC	blood vessel:	n/a
50	chr1:180472298-180472348	H1-hESC	embryonic stem cell:	embryo

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:180471512..180472487-chr10:43133374..43134249,2	Hela-S3	cervix:
2	chr1:180470530..180472800-chr1:181059348..181062070,2	MCF-7	breast:
3	chr1:180470531..180473320-chr1:180599332..180602016,2	K562	blood:
4	chr1:180472105..180473813-chr1:181057993..181060465,2	K562	blood:
5	chr1:180470764..180472384-chr1:180991464..180993107,2	MCF-7	breast:
6	chr1:179922809..179925375-chr1:180469288..180472844,3	MCF-7	breast:
7	chr1:180471479..180472325-chrX:47003829..47004564,2	NB4	blood:
8	chr1:180470493..180473506-chr1:180597830..180602116,4	MCF-7	breast:
9	chr1:180471539..180472351-chrX:48755095..48755718,3	Hela-S3	cervix:
10	chr1:180471780..180472722-chr21:36260550..36261373,2	Hela-S3	cervix:
11	chr1:180470101..180473441-chr1:181055955..181060608,7	K562	blood:
12	chr1:180471844..180473549-chr1:182806960..182809531,2	MCF-7	breast:
13	chr1:145382428..145382959-chr1:180471816..180472628,2	Hela-S3	cervix:
14	chr1:180470962..180473881-chr1:180832608..180834765,2	MCF-7	breast:
15	chr1:180197528..180200245-chr1:180468948..180472883,3	MCF-7	breast:
16	chr1:179869245..179870791-chr1:180471258..180473082,2	MCF-7	breast:

No data

Variant related genes	Relation type
ACBD6	TF binding region
ACBD6	CpG island
ENSG00000272198	Chromatin interaction
ENSG00000143324	Chromatin interaction
ENSG00000102103	Chromatin interaction
ENSG00000135829	Chromatin interaction
ENSG00000196693	Chromatin interaction
ENSG00000159216	Chromatin interaction
ENSG00000264916	Chromatin interaction
ENSG00000121454	Chromatin interaction
ENSG00000135823	Chromatin interaction
ENSG00000201558	Chromatin interaction
ENSG00000162783	Chromatin interaction
ENSG00000147123	Chromatin interaction
ENSG00000233396	Chromatin interaction
ENSG00000260360	Chromatin interaction
ENSG00000126768	Chromatin interaction
ENSG00000182872	Chromatin interaction
ENSG00000272373	Chromatin interaction
ENSG00000135837	Chromatin interaction

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10158367	0.90[ASN][1000 genomes]
rs10465516	0.82[ASN][1000 genomes]
rs10494527	0.90[CHB][hapmap];0.90[CHD][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs10753208	0.83[ASN][1000 genomes]
rs10753209	0.82[CHB][hapmap];0.88[ASN][1000 genomes]
rs10753211	0.85[CHB][hapmap];0.80[JPT][hapmap];0.90[ASN][1000 genomes]
rs10753212	0.90[ASN][1000 genomes]
rs10798746	0.85[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs10798756	0.88[ASN][1000 genomes]
rs10798757	0.88[ASN][1000 genomes]
rs10798759	0.85[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs10798760	0.87[ASN][1000 genomes]
rs10798762	0.85[CHB][hapmap];0.90[CHD][hapmap];0.87[ASN][1000 genomes]
rs10798766	0.88[ASN][1000 genomes]
rs10798769	0.90[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs10798770	0.90[ASN][1000 genomes]
rs10798771	0.90[ASN][1000 genomes]
rs10913968	0.82[ASN][1000 genomes]
rs10913969	0.84[CHB][hapmap]
rs10913973	0.84[ASN][1000 genomes]
rs10913974	0.88[ASN][1000 genomes]
rs10913976	0.88[ASN][1000 genomes]
rs10913978	0.88[ASN][1000 genomes]
rs10913980	0.85[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs10913981	0.85[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs10913982	0.88[ASN][1000 genomes]
rs10913983	0.88[ASN][1000 genomes]
rs10913984	0.85[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs10913985	0.85[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs10913986	0.88[ASN][1000 genomes]
rs10913987	0.88[ASN][1000 genomes]
rs10913994	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs10913998	0.90[ASN][1000 genomes]
rs10914001	0.90[ASN][1000 genomes]
rs10914005	0.90[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs10914010	0.88[ASN][1000 genomes]
rs10914014	0.92[ASN][1000 genomes]
rs10914016	0.88[ASN][1000 genomes]
rs10914017	0.83[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs10914018	0.80[CHB][hapmap];0.90[CHD][hapmap]
rs11580793	0.85[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs11799870	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs12034217	0.85[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs12034669	0.81[ASN][1000 genomes]
rs12039933	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs12041620	0.86[EUR][1000 genomes]
rs12045123	0.81[ASN][1000 genomes]
rs12085808	0.81[ASN][1000 genomes]
rs12091722	0.85[CHB][hapmap]
rs12121043	0.92[ASN][1000 genomes]
rs12122338	0.85[ASN][1000 genomes]
rs12127886	0.90[ASN][1000 genomes]
rs12128560	0.86[ASN][1000 genomes]
rs12129511	0.87[ASN][1000 genomes]
rs12129784	0.88[ASN][1000 genomes]
rs12131071	0.90[ASN][1000 genomes]
rs12132837	0.89[ASN][1000 genomes]
rs12135463	0.90[ASN][1000 genomes]
rs12141348	0.95[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs12141848	0.94[CHB][hapmap];0.88[ASN][1000 genomes]
rs12143350	0.85[ASN][1000 genomes]
rs12404209	0.85[CHB][hapmap]
rs12405902	0.85[CHB][hapmap]
rs12407122	0.81[ASN][1000 genomes]
rs12561776	0.84[ASN][1000 genomes]
rs12565492	0.80[CHB][hapmap];0.90[CHD][hapmap]
rs12730889	0.85[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs12733492	0.92[ASN][1000 genomes]
rs1341924	0.85[CHB][hapmap]
rs1416821	0.94[CHB][hapmap];0.88[ASN][1000 genomes]
rs1416823	0.85[CHB][hapmap];0.90[CHD][hapmap]
rs1538620	0.85[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs16856086	0.86[EUR][1000 genomes]
rs1890731	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1970400	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2105232	0.90[ASN][1000 genomes]
rs28506072	0.83[ASN][1000 genomes]
rs2877415	0.85[CHB][hapmap]
rs3737584	0.85[CHB][hapmap];0.81[CHD][hapmap];0.80[ASN][1000 genomes]
rs3806300	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3923222	0.88[ASN][1000 genomes]
rs4076403	0.85[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs4142992	0.90[ASN][1000 genomes]
rs4418555	0.89[ASN][1000 genomes]
rs4420052	0.89[ASN][1000 genomes]
rs4421553	0.85[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs4442335	0.89[CHD][hapmap];0.86[ASN][1000 genomes]
rs4543756	0.85[CHB][hapmap]
rs4578179	0.84[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs4607831	0.90[ASN][1000 genomes]
rs4634864	0.88[ASN][1000 genomes]
rs4651064	0.85[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs4652504	0.84[ASN][1000 genomes]
rs4652505	0.84[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs60286873	0.82[ASN][1000 genomes]
rs6425634	0.85[CHB][hapmap]
rs6425641	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6425644	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6665719	0.85[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs6670544	0.85[CHB][hapmap];0.80[JPT][hapmap];0.90[ASN][1000 genomes]
rs6674244	0.90[ASN][1000 genomes]
rs6687442	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6687549	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6697924	0.90[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs6699585	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6700986	0.90[ASN][1000 genomes]
rs6704334	0.88[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.83[LWK][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6704437	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.83[LWK][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72720915	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72720917	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72720922	0.83[EUR][1000 genomes]
rs7521151	1.00[CEU][hapmap]
rs7523003	0.84[ASN][1000 genomes]
rs7523857	0.90[ASN][1000 genomes]
rs7528650	0.85[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs7532806	0.81[CHB][hapmap];0.88[ASN][1000 genomes]
rs9701037	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9726041	0.90[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9730180	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003739	chr1:180027760-180483292	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv535217	chr1:180027760-180483292	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1013716	chr1:180287338-180477072	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv535221	chr1:180287338-180477072	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
5	esv2762200	chr1:180300936-180493841	ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
6	nsv1003359	chr1:180300936-180727561	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
7	nsv949311	chr1:180438895-180692815	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180468200-180472600	Active TSS	GM12878-XiMat	blood
2	chr1:180470000-180472800	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr1:180470200-180472400	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr1:180470200-180472400	Active TSS	H1 Cell Line	embryonic stem cell
5	chr1:180470200-180472400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:180470200-180472400	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr1:180470200-180472600	Active TSS	Fetal Kidney	kidney
8	chr1:180470200-180472600	Active TSS	Fetal Lung	lung
9	chr1:180470200-180472800	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr1:180470400-180472400	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr1:180470400-180472400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:180470400-180472400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr1:180470400-180472400	Active TSS	Rectal Smooth Muscle	rectum
14	chr1:180470400-180472400	Active TSS	HSMMtube	muscle
15	chr1:180470400-180472400	Active TSS	K562	blood
16	chr1:180470400-180472400	Active TSS	NHLF	lung
17	chr1:180470400-180472600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:180470400-180472600	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr1:180470400-180472600	Active TSS	Right Ventricle	heart
20	chr1:180470400-180472600	Active TSS	A549	lung
21	chr1:180470400-180472600	Active TSS	NHDF-Ad	bronchial
22	chr1:180470400-180472800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:180470400-180472800	Active TSS	HSMM	muscle
24	chr1:180470600-180472400	Active TSS	H9 Cell Line	embryonic stem cell
25	chr1:180470600-180472400	Active TSS	Muscle Satellite Cultured Cells	--
26	chr1:180470600-180472400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:180470600-180472400	Active TSS	NH-A	brain
28	chr1:180470600-180472600	Active TSS	Fetal Intestine Small	intestine
29	chr1:180470600-180472800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr1:180470800-180472400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr1:180470800-180472400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr1:180470800-180472400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr1:180470800-180472400	Active TSS	Brain Inferior Temporal Lobe	brain
34	chr1:180470800-180472400	Active TSS	Fetal Muscle Leg	muscle
35	chr1:180470800-180472400	Active TSS	NHEK	skin
36	chr1:180470800-180472600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr1:180470800-180472600	Active TSS	Fetal Intestine Large	intestine
38	chr1:180470800-180472800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr1:180470800-180472800	Active TSS	Brain Germinal Matrix	brain
40	chr1:180470800-180472800	Active TSS	Brain Hippocampus Middle	brain
41	chr1:180470800-180472800	Active TSS	Fetal Muscle Trunk	muscle
42	chr1:180470800-180472800	Active TSS	Ovary	ovary
43	chr1:180470800-180472800	Active TSS	Pancreas	Pancrea
44	chr1:180470800-180472800	Active TSS	Psoas Muscle	Psoas
45	chr1:180471000-180472400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr1:180471000-180472400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr1:180471000-180472400	Active TSS	Brain Anterior Caudate	brain
48	chr1:180471000-180472400	Active TSS	Colon Smooth Muscle	Colon
49	chr1:180471000-180472400	Active TSS	Gastric	stomach
50	chr1:180471000-180472400	Active TSS	Lung	lung

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