The 2.0 version of rSNPBase

Variant report

Variant rs12131071
Chromosome Location chr1:180426088-180426089
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180379000-180430800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
2 chr1:180392600-180446200 Weak transcription K562 blood
3 chr1:180401400-180430400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr1:180403400-180426200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr1:180403400-180431200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr1:180403400-180448000 Weak transcription HMEC breast
7 chr1:180404200-180431800 Weak transcription NHEK skin
8 chr1:180404400-180469000 Weak transcription Pancreas Pancrea
9 chr1:180413000-180429400 Weak transcription Fetal Intestine Small intestine
10 chr1:180417600-180431200 Weak transcription Primary T regulatory cells fromperipheralblood blood
11 chr1:180418000-180431200 Weak transcription Primary T helper naive cells fromperipheralblood blood
12 chr1:180418400-180430800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr1:180419000-180426200 Weak transcription Dnd41 blood
14 chr1:180420600-180429600 Weak transcription Fetal Lung lung
15 chr1:180421000-180429000 Weak transcription Brain Substantia Nigra brain
16 chr1:180421000-180430400 Weak transcription Primary B cells from cord blood blood
17 chr1:180421000-180430600 Weak transcription Brain Anterior Caudate brain
18 chr1:180421000-180431200 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr1:180421000-180431800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
20 chr1:180421000-180448000 Weak transcription HSMM muscle
21 chr1:180421200-180426200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr1:180421200-180426400 Weak transcription GM12878-XiMat blood
23 chr1:180421200-180427200 Weak transcription Primary T killer naive cells fromperipheralblood blood
24 chr1:180421200-180429400 Weak transcription Cortex derived primary cultured neurospheres brain
25 chr1:180421200-180430200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr1:180421200-180431200 Weak transcription iPS-20b Cell Line embryonic stem cell
27 chr1:180421200-180431200 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr1:180421200-180431400 Weak transcription Monocytes-CD14+_RO01746 blood
29 chr1:180421200-180431800 Weak transcription A549 lung
30 chr1:180421200-180451600 Weak transcription Muscle Satellite Cultured Cells --
31 chr1:180421400-180431000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
32 chr1:180421600-180429400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr1:180421600-180430600 Weak transcription Breast Myoepithelial Primary Cells Breast
34 chr1:180421600-180431200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr1:180421600-180431200 Weak transcription Ovary ovary
36 chr1:180422200-180430600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
37 chr1:180422600-180427600 Weak transcription Primary T helper cells PMA-I stimulated --
38 chr1:180422800-180426200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
39 chr1:180423000-180429400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr1:180423000-180430600 Weak transcription Stomach Smooth Muscle stomach
41 chr1:180423600-180429400 Weak transcription Fetal Stomach stomach
42 chr1:180424200-180430000 Weak transcription Thymus Thymus
43 chr1:180424400-180429800 Weak transcription Fetal Adrenal Gland Adrenal Gland
44 chr1:180424400-180430800 Weak transcription Primary T helper naive cells from peripheral blood blood
45 chr1:180424800-180429400 Weak transcription Lung lung
46 chr1:180425000-180429400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
47 chr1:180425000-180429600 Weak transcription Primary hematopoietic stem cells blood
48 chr1:180425000-180429600 Weak transcription Fetal Muscle Leg muscle
49 chr1:180425400-180426600 ZNF genes & repeats Primary T cells from cord blood blood
50 chr1:180425600-180426600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015