The 2.0 version of rSNPBase

Variant report

Variant rs12132837
Chromosome Location chr1:180419812-180419813
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180365200-180420600 Weak transcription A549 lung
2 chr1:180379000-180430800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
3 chr1:180392600-180446200 Weak transcription K562 blood
4 chr1:180394800-180420200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
5 chr1:180399000-180420800 Weak transcription Primary T killer naive cells fromperipheralblood blood
6 chr1:180399600-180420400 Weak transcription Primary T helper cells fromperipheralblood blood
7 chr1:180399600-180420400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
8 chr1:180401400-180420200 Weak transcription HSMM muscle
9 chr1:180401400-180430400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr1:180401800-180420800 Weak transcription NHDF-Ad bronchial
11 chr1:180403400-180426200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr1:180403400-180431200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
13 chr1:180403400-180448000 Weak transcription HMEC breast
14 chr1:180404000-180421800 Weak transcription iPS-18 Cell Line embryonic stem cell
15 chr1:180404200-180431800 Weak transcription NHEK skin
16 chr1:180404400-180469000 Weak transcription Pancreas Pancrea
17 chr1:180406200-180420200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr1:180406600-180420600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr1:180409200-180421200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
20 chr1:180410000-180421200 Weak transcription Ovary ovary
21 chr1:180411600-180420200 Weak transcription Cortex derived primary cultured neurospheres brain
22 chr1:180411600-180420800 Weak transcription Primary hematopoietic stem cells blood
23 chr1:180412600-180420000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr1:180413000-180429400 Weak transcription Fetal Intestine Small intestine
25 chr1:180416000-180420200 Weak transcription Fetal Lung lung
26 chr1:180416800-180420600 Weak transcription Fetal Brain Male brain
27 chr1:180417000-180420400 Weak transcription Monocytes-CD14+_RO01746 blood
28 chr1:180417600-180431200 Weak transcription Primary T regulatory cells fromperipheralblood blood
29 chr1:180418000-180420200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr1:180418000-180431200 Weak transcription Primary T helper naive cells fromperipheralblood blood
31 chr1:180418400-180420200 Weak transcription Primary B cells from cord blood blood
32 chr1:180418400-180422000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
33 chr1:180418400-180430800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
34 chr1:180418800-180422600 Weak transcription Liver Liver
35 chr1:180419000-180426200 Weak transcription Dnd41 blood
36 chr1:180419200-180420200 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr1:180419400-180420200 Strong transcription Breast Myoepithelial Primary Cells Breast
38 chr1:180419400-180421600 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
39 chr1:180419600-180420600 Weak transcription Primary T helper cells PMA-I stimulated --
40 chr1:180419600-180420600 Weak transcription Brain Anterior Caudate brain
41 chr1:180419600-180420600 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr1:180419800-180422600 Weak transcription Placenta Amnion Placenta Amnion

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Last update: Aug 31, 2015