The 2.0 version of rSNPBase

Variant report

Variant rs10798754
Chromosome Location chr1:180347938-180347939
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:29 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180310000-180348200 Weak transcription Primary B cells from cord blood blood
2 chr1:180330600-180349000 Weak transcription HMEC breast
3 chr1:180333000-180356200 Weak transcription Ovary ovary
4 chr1:180334200-180348000 Weak transcription Primary T helper cells fromperipheralblood blood
5 chr1:180335800-180349000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
6 chr1:180337000-180349000 Weak transcription Esophagus oesophagus
7 chr1:180337800-180348000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr1:180338400-180348400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
9 chr1:180338600-180348000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
10 chr1:180338600-180349000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
11 chr1:180338600-180349000 Weak transcription Left Ventricle heart
12 chr1:180339600-180349000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
13 chr1:180341200-180401400 Weak transcription Osteobl bone
14 chr1:180342200-180348000 Weak transcription Gastric stomach
15 chr1:180343400-180348000 Weak transcription Fetal Lung lung
16 chr1:180343600-180356400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
17 chr1:180343800-180348000 Weak transcription Duodenum Mucosa Duodenum
18 chr1:180343800-180348200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr1:180344600-180349000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
20 chr1:180345400-180349600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
21 chr1:180345800-180348000 Weak transcription Duodenum Smooth Muscle Duodenum
22 chr1:180346200-180348400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr1:180347800-180348000 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr1:180347800-180348000 Weak transcription Right Ventricle heart
25 chr1:180347800-180348200 ZNF genes & repeats Aorta Aorta
26 chr1:180347800-180348200 Enhancers Pancreas Pancrea
27 chr1:180347800-180348200 Enhancers Psoas Muscle Psoas
28 chr1:180347800-180348400 ZNF genes & repeats Fetal Intestine Small intestine
29 chr1:180347800-180349400 ZNF genes & repeats Primary hematopoietic stem cells blood

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Last update: Aug 31, 2015