The 2.0 version of rSNPBase

Variant report

Variant rs4593778
Chromosome Location chr1:180436548-180436549
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180392600-180446200 Weak transcription K562 blood
2 chr1:180403400-180448000 Weak transcription HMEC breast
3 chr1:180404400-180469000 Weak transcription Pancreas Pancrea
4 chr1:180421000-180448000 Weak transcription HSMM muscle
5 chr1:180421200-180451600 Weak transcription Muscle Satellite Cultured Cells --
6 chr1:180425800-180457600 Weak transcription Aorta Aorta
7 chr1:180427400-180448200 Weak transcription Osteobl bone
8 chr1:180428000-180470000 Weak transcription Rectal Smooth Muscle rectum
9 chr1:180428600-180438000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
10 chr1:180429600-180444600 Weak transcription Esophagus oesophagus
11 chr1:180429600-180455000 Weak transcription Left Ventricle heart
12 chr1:180430200-180454600 Weak transcription Thymus Thymus
13 chr1:180431200-180470200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr1:180431400-180447800 Weak transcription Fetal Stomach stomach
15 chr1:180431400-180448200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
16 chr1:180432000-180451400 Weak transcription Primary T helper naive cells fromperipheralblood blood
17 chr1:180432000-180470600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
18 chr1:180432200-180448000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr1:180432600-180439400 Weak transcription Hela-S3 cervix
20 chr1:180433000-180439600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
21 chr1:180433600-180454200 Weak transcription Adipose Nuclei Adipose
22 chr1:180433800-180455000 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr1:180434000-180448000 Weak transcription Duodenum Mucosa Duodenum
24 chr1:180434000-180465600 Weak transcription Fetal Brain Male brain
25 chr1:180434200-180445200 Weak transcription Dnd41 blood
26 chr1:180434200-180470200 Weak transcription Rectal Mucosa Donor 31 rectum
27 chr1:180434400-180440200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
28 chr1:180434400-180451400 Weak transcription Brain Inferior Temporal Lobe brain
29 chr1:180434600-180444200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
30 chr1:180434600-180448000 Weak transcription Primary B cells from cord blood blood
31 chr1:180434600-180448000 Weak transcription Primary T helper cells PMA-I stimulated --
32 chr1:180434600-180448000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr1:180434600-180448200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr1:180434600-180448200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr1:180434600-180448400 Weak transcription iPS-20b Cell Line embryonic stem cell
36 chr1:180434800-180437200 Strong transcription Cortex derived primary cultured neurospheres brain
37 chr1:180434800-180439800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
38 chr1:180434800-180444400 Weak transcription Primary T helper cells fromperipheralblood blood
39 chr1:180434800-180444400 Weak transcription Fetal Intestine Small intestine
40 chr1:180434800-180451400 Weak transcription Primary T helper naive cells from peripheral blood blood
41 chr1:180434800-180458800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
42 chr1:180435000-180437200 Weak transcription Primary hematopoietic stem cells short term culture blood
43 chr1:180435000-180448000 Weak transcription Fetal Lung lung
44 chr1:180435000-180456400 Weak transcription Fetal Kidney kidney
45 chr1:180435200-180437000 Weak transcription Primary T cells from cord blood blood
46 chr1:180435200-180440400 Weak transcription Primary hematopoietic stem cells blood
47 chr1:180435200-180441000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr1:180435200-180441600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
49 chr1:180435200-180448000 Weak transcription Duodenum Smooth Muscle Duodenum
50 chr1:180435200-180454400 Weak transcription Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015