The 2.0 version of rSNPBase

Variant report

Variant rs6659513
Chromosome Location chr1:180365355-180365356
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:84 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180341200-180401400 Weak transcription Osteobl bone
2 chr1:180348200-180382600 Weak transcription Pancreas Pancrea
3 chr1:180349400-180407000 Weak transcription Esophagus oesophagus
4 chr1:180351600-180378400 Weak transcription HSMM muscle
5 chr1:180352400-180381400 Weak transcription Hela-S3 cervix
6 chr1:180352800-180399400 Weak transcription Fetal Thymus thymus
7 chr1:180354600-180374000 Weak transcription HUES48 Cell Line embryonic stem cell
8 chr1:180354800-180386600 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr1:180355200-180402600 Weak transcription HMEC breast
10 chr1:180355400-180378800 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr1:180355600-180378400 Weak transcription Placenta Placenta
12 chr1:180355600-180390800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
13 chr1:180356600-180381400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr1:180356600-180394000 Weak transcription NHDF-Ad bronchial
15 chr1:180356800-180373000 Weak transcription Fetal Intestine Small intestine
16 chr1:180356800-180378600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
17 chr1:180356800-180378800 Weak transcription Left Ventricle heart
18 chr1:180356800-180380800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
19 chr1:180356800-180406200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr1:180356800-180407000 Weak transcription Aorta Aorta
21 chr1:180357000-180378400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr1:180357800-180366600 Weak transcription Primary T killer memory cells from peripheral blood blood
23 chr1:180358200-180374000 Weak transcription HUES64 Cell Line embryonic stem cell
24 chr1:180360200-180378000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr1:180360400-180394200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr1:180361000-180378600 Weak transcription iPS-18 Cell Line embryonic stem cell
27 chr1:180361000-180381000 Weak transcription Primary T regulatory cells fromperipheralblood blood
28 chr1:180361000-180383400 Weak transcription Primary T killer naive cells fromperipheralblood blood
29 chr1:180361400-180407600 Weak transcription HepG2 liver
30 chr1:180361600-180382800 Weak transcription Liver Liver
31 chr1:180362600-180379200 Weak transcription Muscle Satellite Cultured Cells --
32 chr1:180363400-180385200 Weak transcription Fetal Kidney kidney
33 chr1:180363600-180366000 Weak transcription Placenta Amnion Placenta Amnion
34 chr1:180363600-180366800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr1:180363800-180366000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr1:180363800-180366600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr1:180363800-180378400 Weak transcription Duodenum Mucosa Duodenum
38 chr1:180364000-180365400 Strong transcription Primary T helper cells fromperipheralblood blood
39 chr1:180364000-180365400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr1:180364000-180394200 Weak transcription HSMMtube muscle
41 chr1:180364200-180365400 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
42 chr1:180364200-180365400 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
43 chr1:180364200-180365400 ZNF genes & repeats Fetal Lung lung
44 chr1:180364200-180365400 ZNF genes & repeats GM12878-XiMat blood
45 chr1:180364200-180365800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr1:180364200-180366200 ZNF genes & repeats Primary hematopoietic stem cells blood
47 chr1:180364200-180366600 Strong transcription NH-A brain
48 chr1:180364200-180366800 Strong transcription Primary T helper naive cells fromperipheralblood blood
49 chr1:180364200-180366800 Strong transcription Dnd41 blood
50 chr1:180364400-180366600 Strong transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015