The 2.0 version of rSNPBase

Variant report

Variant rs12142124
Chromosome Location chr1:180432349-180432350
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:28 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180392600-180446200 Weak transcription K562 blood
2 chr1:180403400-180448000 Weak transcription HMEC breast
3 chr1:180404400-180469000 Weak transcription Pancreas Pancrea
4 chr1:180421000-180448000 Weak transcription HSMM muscle
5 chr1:180421200-180451600 Weak transcription Muscle Satellite Cultured Cells --
6 chr1:180425800-180457600 Weak transcription Aorta Aorta
7 chr1:180427400-180448200 Weak transcription Osteobl bone
8 chr1:180428000-180470000 Weak transcription Rectal Smooth Muscle rectum
9 chr1:180428600-180438000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
10 chr1:180429400-180435200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr1:180429600-180444600 Weak transcription Esophagus oesophagus
12 chr1:180429600-180455000 Weak transcription Left Ventricle heart
13 chr1:180430200-180432600 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
14 chr1:180430200-180454600 Weak transcription Thymus Thymus
15 chr1:180431200-180432400 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
16 chr1:180431200-180432800 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
17 chr1:180431200-180435200 ZNF genes & repeats Duodenum Smooth Muscle Duodenum
18 chr1:180431200-180470200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
19 chr1:180431400-180432800 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
20 chr1:180431400-180447800 Weak transcription Fetal Stomach stomach
21 chr1:180431400-180448200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr1:180432000-180432600 Weak transcription Ovary ovary
23 chr1:180432000-180433200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr1:180432000-180451400 Weak transcription Primary T helper naive cells fromperipheralblood blood
25 chr1:180432000-180470600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
26 chr1:180432200-180433800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr1:180432200-180434200 Weak transcription Brain Inferior Temporal Lobe brain
28 chr1:180432200-180448000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015