The 2.0 version of rSNPBase

Variant report

Variant rs10913980
Chromosome Location chr1:180360900-180360901
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180341200-180401400 Weak transcription Osteobl bone
2 chr1:180348200-180382600 Weak transcription Pancreas Pancrea
3 chr1:180349400-180364200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
4 chr1:180349400-180407000 Weak transcription Esophagus oesophagus
5 chr1:180351600-180378400 Weak transcription HSMM muscle
6 chr1:180352400-180381400 Weak transcription Hela-S3 cervix
7 chr1:180352800-180399400 Weak transcription Fetal Thymus thymus
8 chr1:180354200-180364200 Weak transcription NH-A brain
9 chr1:180354600-180374000 Weak transcription HUES48 Cell Line embryonic stem cell
10 chr1:180354800-180386600 Weak transcription Primary T helper naive cells from peripheral blood blood
11 chr1:180355200-180364800 Weak transcription K562 blood
12 chr1:180355200-180402600 Weak transcription HMEC breast
13 chr1:180355400-180361200 Weak transcription Small Intestine intestine
14 chr1:180355400-180378800 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr1:180355600-180378400 Weak transcription Placenta Placenta
16 chr1:180355600-180390800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
17 chr1:180356400-180363800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr1:180356600-180364200 Weak transcription Primary T helper naive cells fromperipheralblood blood
19 chr1:180356600-180364200 Weak transcription Primary T helper cells PMA-I stimulated --
20 chr1:180356600-180381400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr1:180356600-180394000 Weak transcription NHDF-Ad bronchial
22 chr1:180356800-180363600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
23 chr1:180356800-180364200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
24 chr1:180356800-180364800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr1:180356800-180373000 Weak transcription Fetal Intestine Small intestine
26 chr1:180356800-180378600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
27 chr1:180356800-180378800 Weak transcription Left Ventricle heart
28 chr1:180356800-180380800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
29 chr1:180356800-180406200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr1:180356800-180407000 Weak transcription Aorta Aorta
31 chr1:180357000-180361200 Weak transcription Primary hematopoietic stem cells short term culture blood
32 chr1:180357000-180364000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr1:180357000-180364200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr1:180357000-180364200 Weak transcription Fetal Intestine Large intestine
35 chr1:180357000-180364200 Weak transcription Ovary ovary
36 chr1:180357000-180364400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr1:180357000-180378400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
38 chr1:180357800-180366600 Weak transcription Primary T killer memory cells from peripheral blood blood
39 chr1:180358200-180374000 Weak transcription HUES64 Cell Line embryonic stem cell
40 chr1:180358600-180364200 Weak transcription Cortex derived primary cultured neurospheres brain
41 chr1:180359800-180361000 ZNF genes & repeats A549 lung
42 chr1:180359800-180361200 ZNF genes & repeats Primary B cells from cord blood blood
43 chr1:180360000-180361000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr1:180360000-180363800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
45 chr1:180360200-180378000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr1:180360400-180364200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
47 chr1:180360400-180364200 Weak transcription Fetal Lung lung
48 chr1:180360400-180394200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
49 chr1:180360600-180361000 Flanking Active TSS Primary neutrophils fromperipheralblood blood
50 chr1:180360600-180361000 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood

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Last update: Aug 31, 2015