Variant report

Variant	rs66991218
Chromosome Location	chr7:120363683-120363684
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11489533	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11984204	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12533756	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538990	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16870517	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17142923	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2023972	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4730978	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55983815	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66525734	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66678986	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66806979	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120356200-120373000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120357400-120369200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:120358200-120369400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:120358800-120364600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:120358800-120365400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:120359000-120364600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:120359400-120364200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:120360600-120364600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:120360800-120364400	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:120360800-120364800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:120360800-120365000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:120360800-120365800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:120361000-120364400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:120361000-120369000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr7:120362800-120366200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr7:120363200-120364400	Weak transcription	Brain Anterior Caudate	brain
17	chr7:120363400-120369200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:120363600-120365600	Enhancers	Fetal Intestine Small	intestine
19	chr7:120363600-120365600	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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