Variant report

Variant	rs12538990
Chromosome Location	chr7:120364028-120364029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:120363337..120365497-chr7:120365529..120367227,2	MCF-7	breast:
2	chr7:120363130..120367841-chr7:120369121..120372077,4	K562	blood:
3	chr7:120357434..120359012-chr7:120363657..120365832,2	K562	blood:
4	chr7:120360448..120362769-chr7:120363784..120365876,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10487401	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs11489533	0.81[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11984204	0.83[CHB][hapmap];0.83[CHD][hapmap];0.80[ASN][1000 genomes]
rs12533756	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16870517	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17142885	0.86[CHB][hapmap];0.93[CHD][hapmap]
rs17142891	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs17142923	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2023972	0.81[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2189977	0.83[CHB][hapmap]
rs4727914	0.83[CHB][hapmap];0.83[CHD][hapmap]
rs4730976	0.82[CHD][hapmap]
rs4730977	0.83[CHB][hapmap]
rs4730978	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4730979	0.83[CHB][hapmap]
rs5009999	0.83[CHB][hapmap]
rs55983815	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6466756	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6466757	0.83[CHB][hapmap];0.87[CHD][hapmap]
rs66525734	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66678986	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66806979	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66991218	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7458164	0.83[CHB][hapmap]
rs985168	0.86[CHB][hapmap]
rs987165	0.95[CEU][hapmap]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120356200-120373000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120357400-120369200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:120358200-120369400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:120358800-120364600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:120358800-120365400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:120359000-120364600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:120359400-120364200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:120360600-120364600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:120360800-120364400	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:120360800-120364800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:120360800-120365000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:120360800-120365800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:120361000-120364400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:120361000-120369000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr7:120362800-120366200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr7:120363200-120364400	Weak transcription	Brain Anterior Caudate	brain
17	chr7:120363400-120369200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:120363600-120365600	Enhancers	Fetal Intestine Small	intestine
19	chr7:120363600-120365600	Enhancers	GM12878-XiMat	blood
20	chr7:120364000-120364200	Enhancers	Small Intestine	intestine
21	chr7:120364000-120366200	Enhancers	Liver	Liver

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