Variant report

Variant	rs2023972
Chromosome Location	chr7:120329042-120329043
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:21685388..21686219-chr7:120328726..120329601,2	MCF-7	breast:
2	chr7:120323919..120325444-chr7:120328425..120329948,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10487401	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs11489533	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11984204	0.82[CHB][hapmap];0.87[AMR][1000 genomes]
rs12533756	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12538990	0.81[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs16870517	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17142885	0.86[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap]
rs17142891	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs17142923	1.00[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2189977	0.82[CHB][hapmap]
rs4727914	0.82[CHB][hapmap]
rs4730975	0.81[CHD][hapmap]
rs4730977	0.82[CHB][hapmap]
rs4730978	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4730979	0.82[CHB][hapmap]
rs5009999	0.82[CHB][hapmap]
rs55983815	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6466756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6466757	0.82[CHB][hapmap]
rs66525734	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs66678986	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs66806979	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66991218	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6944490	0.83[GIH][hapmap]
rs7458164	0.82[CHB][hapmap]
rs985168	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs987165	1.00[CEU][hapmap]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120324800-120332200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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