Variant report

Variant	rs16870517
Chromosome Location	chr7:120365783-120365784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:120360024..120361772-chr7:120365516..120368102,2	K562	blood:
2	chr7:120365224..120365804-chr7:120432177..120432677,2	K562	blood:
3	chr7:120102029..120102882-chr7:120365430..120366363,2	K562	blood:
4	chr7:120195090..120195825-chr7:120365406..120366067,2	MCF-7	breast:
5	chr7:120363130..120367841-chr7:120369121..120372077,4	K562	blood:
6	chr7:120357434..120359012-chr7:120363657..120365832,2	K562	blood:
7	chr7:120363337..120365497-chr7:120365529..120367227,2	MCF-7	breast:
8	chr7:120360448..120362769-chr7:120363784..120365876,2	MCF-7	breast:
9	chr7:120365276..120366203-chr7:120431867..120432670,2	MCF-7	breast:

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10487401	0.87[CHB][hapmap]
rs11489533	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11984204	0.83[CHB][hapmap];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12533756	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12538990	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17142885	0.86[CHB][hapmap]
rs17142891	0.87[CHB][hapmap]
rs17142923	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2023972	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2189977	0.83[CHB][hapmap]
rs4727914	0.83[CHB][hapmap]
rs4730978	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55983815	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6466756	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6466757	0.83[CHB][hapmap]
rs66525734	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66678986	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66806979	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66991218	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7458164	0.83[CHB][hapmap]
rs985168	0.87[CHB][hapmap]
rs987165	0.90[CEU][hapmap]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120356200-120373000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120357400-120369200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:120358200-120369400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:120360800-120365800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:120361000-120369000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr7:120362800-120366200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr7:120363400-120369200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:120364000-120366200	Enhancers	Liver	Liver
9	chr7:120364200-120366600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:120364800-120369200	Weak transcription	Colon Smooth Muscle	Colon
11	chr7:120365000-120366400	Enhancers	Brain Cingulate Gyrus	brain
12	chr7:120365000-120380600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:120365400-120365800	Active TSS	Brain Anterior Caudate	brain
14	chr7:120365400-120365800	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr7:120365400-120366000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:120365400-120369200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:120365600-120366000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:120365600-120366000	Enhancers	Brain Hippocampus Middle	brain
19	chr7:120365600-120366600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:120365600-120367600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:120365600-120369000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:120365600-120369000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr7:120365600-120369000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr7:120365600-120369000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr7:120365600-120369200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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