Variant report

Variant	rs17142923
Chromosome Location	chr7:120353373-120353374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120347689..120350354-chr7:120351785..120354873,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10487401	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs11489533	1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11984204	0.83[CHB][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12533756	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538990	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1468361	0.88[CEU][hapmap]
rs16870517	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17142885	0.86[CHB][hapmap];0.93[CHD][hapmap]
rs17142891	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs17142902	0.94[CEU][hapmap]
rs17142908	0.94[CEU][hapmap]
rs2023972	1.00[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2189977	0.83[CHB][hapmap]
rs4727914	0.83[CHB][hapmap]
rs4730975	0.88[CHD][hapmap]
rs4730977	0.83[CHB][hapmap]
rs4730978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730979	0.83[CHB][hapmap]
rs5009999	0.83[CHB][hapmap]
rs55983815	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466755	0.86[CEU][hapmap]
rs6466756	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6466757	0.83[CHB][hapmap]
rs66525734	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66678986	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66784957	0.80[EUR][1000 genomes]
rs66806979	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66991218	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6944490	0.88[CEU][hapmap]
rs7458164	0.83[CHB][hapmap]
rs985168	0.86[CHB][hapmap]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120350200-120355000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:120350400-120355200	Weak transcription	Hela-S3	cervix
3	chr7:120353000-120353800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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