Variant report

Variant	rs11984204
Chromosome Location	chr7:120352110-120352111
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120347689..120350354-chr7:120351785..120354873,3	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1012983	0.85[JPT][hapmap]
rs11489533	0.83[CHB][hapmap];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12533756	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12538990	0.83[CHB][hapmap];0.83[CHD][hapmap];0.80[ASN][1000 genomes]
rs16870517	0.83[CHB][hapmap];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17142923	0.83[CHB][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2023972	0.82[CHB][hapmap];0.87[AMR][1000 genomes]
rs2189976	0.85[JPT][hapmap]
rs2189977	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap]
rs4727912	0.85[JPT][hapmap]
rs4727914	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.88[MKK][hapmap]
rs4730972	0.85[JPT][hapmap]
rs4730976	0.81[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];0.87[MEX][hapmap]
rs4730977	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4730978	0.83[CHB][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4730979	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs5009999	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55983815	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60505248	0.84[ASN][1000 genomes]
rs6466756	0.83[CHB][hapmap]
rs6466757	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.81[MKK][hapmap];0.84[TSI][hapmap];0.86[ASN][1000 genomes]
rs66525734	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs66678986	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs66806979	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs66991218	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7458164	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.88[ASN][1000 genomes]
rs7795646	0.81[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11984204	CAV1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120350200-120355000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:120350400-120355200	Weak transcription	Hela-S3	cervix

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