Variant report

Variant	rs6466757
Chromosome Location	chr7:120367739-120367740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120360024..120361772-chr7:120365516..120368102,2	K562	blood:
2	chr7:120363130..120367841-chr7:120369121..120372077,4	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1012983	0.85[JPT][hapmap]
rs11489533	0.83[CHB][hapmap];0.83[CHD][hapmap]
rs11984204	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.81[MKK][hapmap];0.84[TSI][hapmap];0.86[ASN][1000 genomes]
rs12538990	0.83[CHB][hapmap];0.87[CHD][hapmap]
rs16870517	0.83[CHB][hapmap]
rs17142885	0.80[CHD][hapmap]
rs17142923	0.83[CHB][hapmap]
rs2023972	0.82[CHB][hapmap]
rs2189976	0.85[JPT][hapmap]
rs2189977	0.87[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap]
rs4727912	0.85[JPT][hapmap]
rs4727914	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap]
rs4730972	0.85[JPT][hapmap]
rs4730976	0.91[CHB][hapmap];0.86[CHD][hapmap];0.83[MEX][hapmap];0.82[ASN][1000 genomes]
rs4730977	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4730978	0.83[CHB][hapmap]
rs4730979	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5009999	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs60505248	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6466756	0.83[CHB][hapmap]
rs7458164	0.87[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7795646	0.81[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6466757	WASL	cis	parietal	SCAN
rs6466757	CAV1	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120356200-120373000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120357400-120369200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:120358200-120369400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:120361000-120369000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:120363400-120369200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:120364800-120369200	Weak transcription	Colon Smooth Muscle	Colon
7	chr7:120365000-120380600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:120365400-120369200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:120365600-120369000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:120365600-120369000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:120365600-120369000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr7:120365600-120369000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr7:120365600-120369200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:120365800-120369000	Weak transcription	Brain Anterior Caudate	brain
15	chr7:120366000-120369000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:120366000-120369000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:120366200-120368800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr7:120366600-120369000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:120367600-120368000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr7:120367600-120368000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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