Variant report

Variant	rs6735306
Chromosome Location	chr2:56107563-56107564
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11678312	0.80[EUR][1000 genomes]
rs11680866	1.00[CHD][hapmap]
rs11682872	0.96[EUR][1000 genomes]
rs11688992	0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs11691041	0.93[EUR][1000 genomes]
rs11691472	0.91[CEU][hapmap];0.94[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs11693381	0.92[EUR][1000 genomes]
rs1367229	0.80[EUR][1000 genomes]
rs17047302	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17369365	0.80[EUR][1000 genomes]
rs2163238	0.96[EUR][1000 genomes]
rs28789713	0.90[EUR][1000 genomes]
rs4671258	0.81[CEU][hapmap];0.83[GIH][hapmap]
rs4671261	0.92[EUR][1000 genomes]
rs55916998	0.96[EUR][1000 genomes]
rs55987978	0.98[EUR][1000 genomes]
rs56102096	0.96[EUR][1000 genomes]
rs57233927	0.96[EUR][1000 genomes]
rs59504093	0.96[EUR][1000 genomes]
rs60693760	0.96[EUR][1000 genomes]
rs6705051	0.91[EUR][1000 genomes]
rs6719384	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72797607	0.80[EUR][1000 genomes]
rs72797613	0.80[EUR][1000 genomes]
rs72805666	0.80[EUR][1000 genomes]
rs72805668	0.80[EUR][1000 genomes]
rs72805673	0.92[EUR][1000 genomes]
rs72805674	0.92[EUR][1000 genomes]
rs72805675	0.92[EUR][1000 genomes]
rs72807714	0.96[EUR][1000 genomes]
rs72807727	0.96[EUR][1000 genomes]
rs72807728	0.96[EUR][1000 genomes]
rs72807744	0.96[EUR][1000 genomes]
rs7563085	0.91[CEU][hapmap];0.94[GIH][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs7581441	0.96[EUR][1000 genomes]
rs7582381	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56089200-56112200	Weak transcription	Pancreas	Pancrea
2	chr2:56090000-56107600	Weak transcription	Fetal Stomach	stomach
3	chr2:56092400-56111600	Genic enhancers	HUVEC	blood vessel
4	chr2:56092800-56107800	Weak transcription	Brain Anterior Caudate	brain
5	chr2:56092800-56112400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr2:56092800-56114400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr2:56093800-56109000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:56094800-56116200	Weak transcription	Spleen	Spleen
9	chr2:56095600-56109600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:56097000-56108800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:56098000-56107600	Weak transcription	Lung	lung
12	chr2:56101000-56107600	Weak transcription	Gastric	stomach
13	chr2:56103200-56107600	Weak transcription	Right Atrium	heart
14	chr2:56103200-56108000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr2:56103400-56110000	Weak transcription	A549	lung
16	chr2:56103600-56107600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr2:56103600-56107800	Weak transcription	Fetal Intestine Large	intestine
18	chr2:56103800-56109400	Strong transcription	HSMM	muscle
19	chr2:56104600-56115000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr2:56104800-56109000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:56104800-56109000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr2:56105000-56107600	Weak transcription	NHDF-Ad	bronchial
23	chr2:56105000-56110400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr2:56105000-56112600	Weak transcription	HSMMtube	muscle
25	chr2:56105800-56109200	Strong transcription	NHEK	skin
26	chr2:56106000-56108400	Strong transcription	Ovary	ovary
27	chr2:56106200-56108200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr2:56106200-56108400	Genic enhancers	Aorta	Aorta
29	chr2:56106400-56109000	Strong transcription	HMEC	breast
30	chr2:56106600-56108800	Strong transcription	NH-A	brain
31	chr2:56106800-56108400	Strong transcription	Fetal Kidney	kidney
32	chr2:56106800-56108400	Enhancers	Hela-S3	cervix
33	chr2:56106800-56108600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr2:56107000-56107800	Strong transcription	Placenta Amnion	Placenta Amnion
35	chr2:56107000-56107800	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr2:56107000-56108200	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr2:56107000-56108200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr2:56107000-56108400	Genic enhancers	NHLF	lung
39	chr2:56107000-56109000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr2:56107000-56109000	Genic enhancers	Osteobl	bone
41	chr2:56107400-56107600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr2:56107400-56107800	Enhancers	Fetal Lung	lung
43	chr2:56107400-56108200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr2:56107400-56108400	Genic enhancers	Adipose Nuclei	Adipose

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