Variant report

Variant	rs6745900
Chromosome Location	chr2:210516328-210516329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16843209	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16843222	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16843257	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16843292	1.00[AMR][1000 genomes]
rs59175910	1.00[AMR][1000 genomes]
rs59335890	1.00[AMR][1000 genomes]
rs59417586	0.93[AFR][1000 genomes]
rs6745316	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73071056	1.00[AMR][1000 genomes]
rs73071057	1.00[AMR][1000 genomes]
rs73071074	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73072859	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73072863	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73072867	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73072876	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73074705	1.00[AMR][1000 genomes]
rs73074707	1.00[AMR][1000 genomes]
rs7576723	0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7576860	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754281	chr2:210484777-210543711	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210494800-210517800	Weak transcription	Aorta	Aorta
2	chr2:210501000-210517800	Weak transcription	Fetal Brain Female	brain
3	chr2:210501800-210517800	Weak transcription	Brain Germinal Matrix	brain
4	chr2:210503600-210517800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:210507800-210517800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:210507800-210525800	Weak transcription	NH-A	brain
7	chr2:210508000-210519000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:210508000-210527800	Weak transcription	HUVEC	blood vessel
9	chr2:210508400-210527800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:210509600-210517800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:210513600-210525600	Weak transcription	Fetal Brain Male	brain
12	chr2:210513800-210516800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:210514000-210528000	Weak transcription	Ovary	ovary
14	chr2:210515400-210518000	Weak transcription	Brain Anterior Caudate	brain
15	chr2:210515800-210520400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr2:210516000-210517800	Weak transcription	Brain Angular Gyrus	brain
17	chr2:210516200-210517800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr2:210516200-210519400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr2:210516200-210525800	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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