Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10204207	0.80[ASN][1000 genomes]
rs11896762	0.85[EUR][1000 genomes]
rs12105310	0.88[AFR][1000 genomes]
rs12613572	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12620654	0.83[EUR][1000 genomes]
rs12621444	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12623006	0.94[ASN][1000 genomes]
rs16843034	0.87[EUR][1000 genomes]
rs288070	0.96[ASN][1000 genomes]
rs288071	0.96[ASN][1000 genomes]
rs288087	0.84[ASN][1000 genomes]
rs288088	0.84[ASN][1000 genomes]
rs288089	1.00[ASN][1000 genomes]
rs288091	1.00[ASN][1000 genomes]
rs288094	1.00[ASN][1000 genomes]
rs288096	0.97[ASN][1000 genomes]
rs56023260	0.82[EUR][1000 genomes]
rs56164239	0.84[ASN][1000 genomes]
rs56677957	0.80[ASN][1000 genomes]
rs57114516	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57383822	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57781584	0.82[EUR][1000 genomes]
rs59883519	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60497472	0.82[EUR][1000 genomes]
rs6722585	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73071034	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7568260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7593381	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7594825	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210388400-210402200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:210391600-210396000	Weak transcription	NHLF	lung
3	chr2:210391600-210398600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr2:210392000-210406000	Weak transcription	Fetal Brain Female	brain
5	chr2:210392400-210405400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:210393400-210405400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:210394400-210397200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:210395000-210396800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:210395000-210397000	Enhancers	Pancreatic Islets	Pancreatic Islet

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