Variant report

Variant	rs67704458
Chromosome Location	chr19:53394562-53394563
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr19:53394437-53394874	MCF-7	breast:	n/a	n/a
2	GATA1	chr19:53394509-53394956	K562	blood:	n/a	n/a
3	ZNF384	chr19:53394449-53394874	K562	blood:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:53391514..53397028-chr19:53398889..53402751,6	K562	blood:
2	chr19:53393138..53396276-chr19:53398172..53401096,6	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF320-2	chr19:53394482-53394599	NONHSAT067595
2	lnc-ZNF320-2	chr19:53394513-53394599	NONHSAT067596
3	lnc-ZNF320-2	chr19:53394482-53394599	NONHSAT067594

No data

Variant related genes	Relation type
ZNF320	TF binding region
ENSG00000182986	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11665695	0.93[ASN][1000 genomes]
rs12459292	0.89[ASN][1000 genomes]
rs12459311	0.89[ASN][1000 genomes]
rs12460825	0.85[ASN][1000 genomes]
rs12461022	0.87[ASN][1000 genomes]
rs12461426	0.89[ASN][1000 genomes]
rs12461584	0.87[ASN][1000 genomes]
rs12462831	0.85[ASN][1000 genomes]
rs12975820	0.87[ASN][1000 genomes]
rs12976257	0.87[ASN][1000 genomes]
rs12977727	0.88[ASN][1000 genomes]
rs12977983	0.88[ASN][1000 genomes]
rs12978427	0.84[ASN][1000 genomes]
rs12981949	0.89[ASN][1000 genomes]
rs34041654	0.89[ASN][1000 genomes]
rs34101597	0.85[ASN][1000 genomes]
rs34109842	0.89[ASN][1000 genomes]
rs34286924	0.89[ASN][1000 genomes]
rs34439769	0.87[ASN][1000 genomes]
rs34736575	0.87[ASN][1000 genomes]
rs34758976	0.87[ASN][1000 genomes]
rs35140844	0.84[ASN][1000 genomes]
rs35386187	0.88[ASN][1000 genomes]
rs35627541	0.89[ASN][1000 genomes]
rs36016771	0.89[ASN][1000 genomes]
rs67564867	0.89[ASN][1000 genomes]
rs67817488	0.89[ASN][1000 genomes]
rs7248891	0.87[ASN][1000 genomes]
rs7256296	0.87[ASN][1000 genomes]
rs7256753	0.87[ASN][1000 genomes]
rs8109175	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057296	chr19:52950339-53396986	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv912306	chr19:53092465-53400760	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv912307	chr19:53092465-53433054	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv912308	chr19:53092465-53436337	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv912309	chr19:53092465-53440653	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv912310	chr19:53092465-53451291	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv912313	chr19:53103875-53436337	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv912317	chr19:53105547-53440653	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	nsv1066762	chr19:53112568-53552217	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
10	nsv912318	chr19:53118278-53451291	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
11	nsv432072	chr19:53144788-53554388	Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
12	esv3401212	chr19:53151131-53482063	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv912321	chr19:53186836-53451291	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
14	nsv1058903	chr19:53193570-53489633	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	nsv1067280	chr19:53193570-53567287	Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
16	nsv544062	chr19:53193570-53567287	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
17	nsv580030	chr19:53194344-53547394	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
18	nsv1057118	chr19:53195426-53480449	Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
19	nsv530807	chr19:53210488-53695881	Strong transcription Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
20	nsv961240	chr19:53242965-53395960	Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
21	nsv912323	chr19:53249347-53451291	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
22	esv3431689	chr19:53291230-53483998	Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
23	nsv458747	chr19:53302481-53424324	ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
24	nsv580034	chr19:53302481-53424324	Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
25	nsv912329	chr19:53317001-53440653	Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
26	nsv912330	chr19:53317001-53478109	Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
27	nsv1064234	chr19:53346827-53480449	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
28	esv3319159	chr19:53361167-53446431	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
29	esv3319160	chr19:53361308-53446343	ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
30	nsv912340	chr19:53370345-53430362	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
31	esv3326632	chr19:53371248-53697569	Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
32	nsv580045	chr19:53374787-53401760	Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
33	esv3392897	chr19:53389142-53418469	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53380400-53398800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr19:53380600-53397200	Strong transcription	Fetal Brain Female	brain
3	chr19:53381800-53397200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr19:53381800-53397400	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr19:53381800-53398200	Strong transcription	Dnd41	blood
6	chr19:53382000-53395200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr19:53382400-53395800	Strong transcription	H1 Cell Line	embryonic stem cell
8	chr19:53383400-53395000	Strong transcription	Brain Germinal Matrix	brain
9	chr19:53384000-53397600	Strong transcription	Fetal Muscle Trunk	muscle
10	chr19:53384800-53395000	Strong transcription	Stomach Smooth Muscle	stomach
11	chr19:53385200-53395400	Strong transcription	Skeletal Muscle Female	skeletal muscle
12	chr19:53385200-53399400	Weak transcription	Psoas Muscle	Psoas
13	chr19:53385400-53399400	Weak transcription	Fetal Heart	heart
14	chr19:53385600-53395000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
15	chr19:53385600-53399000	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr19:53385600-53399800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr19:53385800-53395000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr19:53386200-53395200	Strong transcription	H9 Cell Line	embryonic stem cell
19	chr19:53386200-53395200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr19:53386200-53397000	Strong transcription	Ovary	ovary
21	chr19:53386200-53399000	Strong transcription	Fetal Stomach	stomach
22	chr19:53386400-53394800	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr19:53387000-53399000	Strong transcription	Fetal Muscle Leg	muscle
24	chr19:53387000-53399800	Weak transcription	Fetal Brain Male	brain
25	chr19:53387200-53399800	Weak transcription	NHLF	lung
26	chr19:53387400-53398600	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr19:53387800-53395000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr19:53388000-53394600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr19:53388000-53395200	Strong transcription	Adipose Nuclei	Adipose
30	chr19:53388200-53394800	Strong transcription	Primary B cells from peripheral blood	blood
31	chr19:53388200-53396600	Weak transcription	HMEC	breast
32	chr19:53388200-53399400	Weak transcription	Hela-S3	cervix
33	chr19:53388200-53399800	Weak transcription	HUVEC	blood vessel
34	chr19:53388400-53396800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr19:53388400-53399000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr19:53388400-53399800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr19:53388600-53395400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr19:53388600-53397400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr19:53388600-53398400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr19:53388600-53399200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr19:53388800-53395000	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr19:53388800-53399000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr19:53389200-53398600	Strong transcription	Fetal Intestine Large	intestine
44	chr19:53389200-53399000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr19:53389800-53395600	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr19:53390000-53395000	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr19:53390000-53396800	Weak transcription	Colon Smooth Muscle	Colon
48	chr19:53390000-53399000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr19:53390000-53399800	Weak transcription	Stomach Mucosa	stomach
50	chr19:53390200-53395600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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