Variant report

Variant rs12461022
Chromosome Location chr19:53387376-53387377
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:53379800-53388600 ZNF genes & repeats Liver Liver
2 chr19:53380200-53390200 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
3 chr19:53380400-53391000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
4 chr19:53380400-53391200 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr19:53380400-53391200 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
6 chr19:53380400-53391200 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
7 chr19:53380400-53398800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
8 chr19:53380600-53390200 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
9 chr19:53380600-53397200 Strong transcription Fetal Brain Female brain
10 chr19:53381200-53388800 ZNF genes & repeats Duodenum Mucosa Duodenum
11 chr19:53381600-53394400 Strong transcription iPS-18 Cell Line embryonic stem cell
12 chr19:53381800-53388000 ZNF genes & repeats Primary Natural Killer cells fromperipheralblood blood
13 chr19:53381800-53388200 ZNF genes & repeats K562 blood
14 chr19:53381800-53388400 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr19:53381800-53388600 ZNF genes & repeats Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr19:53381800-53388600 ZNF genes & repeats Primary neutrophils fromperipheralblood blood
17 chr19:53381800-53388600 ZNF genes & repeats Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr19:53381800-53388800 ZNF genes & repeats Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr19:53381800-53391000 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr19:53381800-53391000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr19:53381800-53391200 ZNF genes & repeats Primary hematopoietic stem cells blood
22 chr19:53381800-53391200 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr19:53381800-53391200 Strong transcription Placenta Amnion Placenta Amnion
24 chr19:53381800-53392600 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
25 chr19:53381800-53394200 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
26 chr19:53381800-53397200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
27 chr19:53381800-53397400 Strong transcription HUES48 Cell Line embryonic stem cell
28 chr19:53381800-53398200 Strong transcription Dnd41 blood
29 chr19:53382000-53387400 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
30 chr19:53382000-53388000 ZNF genes & repeats Adipose Nuclei Adipose
31 chr19:53382000-53388400 ZNF genes & repeats Primary B cells from cord blood blood
32 chr19:53382000-53388400 ZNF genes & repeats Small Intestine intestine
33 chr19:53382000-53388600 ZNF genes & repeats Primary T helper naive cells fromperipheralblood blood
34 chr19:53382000-53388600 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood
35 chr19:53382000-53388800 ZNF genes & repeats Rectal Mucosa Donor 31 rectum
36 chr19:53382000-53389200 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
37 chr19:53382000-53389800 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
38 chr19:53382000-53390000 ZNF genes & repeats Primary T helper cells PMA-I stimulated --
39 chr19:53382000-53390000 ZNF genes & repeats Rectal Mucosa Donor 29 rectum
40 chr19:53382000-53390800 Strong transcription iPS-15b Cell Line embryonic stem cell
41 chr19:53382000-53395200 Strong transcription Breast Myoepithelial Primary Cells Breast
42 chr19:53382200-53387800 Strong transcription Rectal Smooth Muscle rectum
43 chr19:53382400-53395800 Strong transcription H1 Cell Line embryonic stem cell
44 chr19:53383400-53388200 ZNF genes & repeats Sigmoid Colon Sigmoid Colon
45 chr19:53383400-53388600 Strong transcription Fetal Kidney kidney
46 chr19:53383400-53388600 ZNF genes & repeats Thymus Thymus
47 chr19:53383400-53395000 Strong transcription Brain Germinal Matrix brain
48 chr19:53383600-53387800 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
49 chr19:53383600-53388200 ZNF genes & repeats HUVEC blood vessel
50 chr19:53383600-53388200 ZNF genes & repeats NHEK skin

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