Variant report

Variant rs12978427
Chromosome Location chr19:53381523-53381524
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:53361400-53381800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr19:53361400-53381800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr19:53361400-53381800 Weak transcription Cortex derived primary cultured neurospheres brain
4 chr19:53361400-53381800 Weak transcription Brain Angular Gyrus brain
5 chr19:53361400-53382000 Weak transcription H9 Cell Line embryonic stem cell
6 chr19:53361400-53382000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
7 chr19:53361600-53381800 Weak transcription Psoas Muscle Psoas
8 chr19:53361800-53381800 Weak transcription Brain Anterior Caudate brain
9 chr19:53361800-53381800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
10 chr19:53361800-53381800 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr19:53361800-53383800 Weak transcription Brain Cingulate Gyrus brain
12 chr19:53362000-53382000 Weak transcription Breast Myoepithelial Primary Cells Breast
13 chr19:53370600-53382000 Weak transcription Brain Inferior Temporal Lobe brain
14 chr19:53371600-53382000 Weak transcription Stomach Smooth Muscle stomach
15 chr19:53372000-53381800 Weak transcription Placenta Placenta
16 chr19:53374600-53381800 Weak transcription Fetal Stomach stomach
17 chr19:53374800-53381800 Weak transcription Left Ventricle heart
18 chr19:53374800-53382000 Weak transcription Brain Hippocampus Middle brain
19 chr19:53375400-53381800 Weak transcription Colon Smooth Muscle Colon
20 chr19:53375400-53381800 Weak transcription Fetal Muscle Leg muscle
21 chr19:53376000-53383200 Weak transcription Brain Substantia Nigra brain
22 chr19:53377200-53383400 Weak transcription Brain Germinal Matrix brain
23 chr19:53377600-53382000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
24 chr19:53377800-53383600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
25 chr19:53378800-53382000 Weak transcription Skeletal Muscle Female skeletal muscle
26 chr19:53379000-53381800 Weak transcription K562 blood
27 chr19:53379000-53383400 Weak transcription Fetal Kidney kidney
28 chr19:53379000-53383800 Weak transcription Fetal Brain Male brain
29 chr19:53379200-53381800 Weak transcription HSMM muscle
30 chr19:53379200-53382000 Weak transcription Fetal Lung lung
31 chr19:53379400-53381600 Weak transcription iPS-18 Cell Line embryonic stem cell
32 chr19:53379800-53381800 Weak transcription iPS-20b Cell Line embryonic stem cell
33 chr19:53379800-53388600 ZNF genes & repeats Liver Liver
34 chr19:53380000-53381800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr19:53380000-53381800 Weak transcription HUES48 Cell Line embryonic stem cell
36 chr19:53380000-53381800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
37 chr19:53380000-53381800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
38 chr19:53380000-53381800 Weak transcription Fetal Muscle Trunk muscle
39 chr19:53380000-53381800 Weak transcription Dnd41 blood
40 chr19:53380200-53382000 Weak transcription iPS-15b Cell Line embryonic stem cell
41 chr19:53380200-53382000 Weak transcription Right Ventricle heart
42 chr19:53380200-53390200 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
43 chr19:53380400-53383600 Weak transcription Hela-S3 cervix
44 chr19:53380400-53391000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr19:53380400-53391200 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr19:53380400-53391200 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
47 chr19:53380400-53391200 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
48 chr19:53380400-53398800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
49 chr19:53380600-53381800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
50 chr19:53380600-53381800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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