Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:102239730..102242491-chr3:102243042..102245931,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10048914	1.00[JPT][hapmap]
rs10937053	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11715985	0.92[ASN][1000 genomes]
rs11716993	0.81[ASN][1000 genomes]
rs11720144	1.00[JPT][hapmap]
rs12233481	1.00[JPT][hapmap]
rs13315672	1.00[JPT][hapmap]
rs1435204	1.00[JPT][hapmap]
rs1473269	1.00[JPT][hapmap]
rs17771760	1.00[ASN][1000 genomes]
rs17820915	1.00[JPT][hapmap]
rs17822800	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17822848	1.00[JPT][hapmap];0.86[LWK][hapmap]
rs2164264	1.00[JPT][hapmap]
rs3891857	1.00[JPT][hapmap]
rs55890737	1.00[ASN][1000 genomes]
rs62272494	1.00[ASN][1000 genomes]
rs62272498	1.00[ASN][1000 genomes]
rs62272536	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62272537	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62272539	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6784826	1.00[JPT][hapmap]
rs6807210	1.00[JPT][hapmap]
rs73150403	0.81[ASN][1000 genomes]
rs9290704	1.00[JPT][hapmap]
rs9820382	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9852572	1.00[JPT][hapmap]
rs9859640	1.00[JPT][hapmap]
rs9861348	1.00[JPT][hapmap]
rs9861714	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9870734	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1009392	chr3:102199756-102631205	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv3926	chr3:102213136-102257633	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102239200-102241200	Enhancers	Fetal Lung	lung
2	chr3:102240000-102241200	Enhancers	Fetal Kidney	kidney
3	chr3:102240400-102241000	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr3:102240600-102240800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:102240600-102241400	Enhancers	Duodenum Mucosa	Duodenum

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