Variant report

Variant	rs9861714
Chromosome Location	chr3:102228007-102228008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10048914	1.00[JPT][hapmap]
rs10937053	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715985	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11716993	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11720144	1.00[JPT][hapmap]
rs12233481	1.00[JPT][hapmap]
rs1284775	0.86[AFR][1000 genomes]
rs13315672	1.00[JPT][hapmap]
rs1435204	1.00[JPT][hapmap]
rs1473269	1.00[JPT][hapmap]
rs17771760	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17820915	1.00[JPT][hapmap]
rs17822800	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17822848	1.00[JPT][hapmap]
rs2164264	1.00[JPT][hapmap]
rs3891857	1.00[JPT][hapmap]
rs55890737	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62272494	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62272498	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62272536	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62272537	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62272539	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6784826	1.00[JPT][hapmap]
rs6807210	1.00[JPT][hapmap]
rs6809935	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73150403	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9290704	1.00[JPT][hapmap]
rs9290706	0.82[YRI][hapmap]
rs9820382	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9852572	1.00[JPT][hapmap]
rs9859640	1.00[JPT][hapmap]
rs9861348	1.00[JPT][hapmap]
rs9870734	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1009392	chr3:102199756-102631205	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv3926	chr3:102213136-102257633	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102223800-102229600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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