The 2.0 version of rSNPBase

Variant report

Variant rs6854759
Chromosome Location chr4:53883622-53883623
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:53873400-53886800 Weak transcription Left Ventricle heart
2 chr4:53874600-53885000 Weak transcription Spleen Spleen
3 chr4:53876000-53885800 Weak transcription Small Intestine intestine
4 chr4:53876800-53884600 Weak transcription Liver Liver
5 chr4:53878400-53888000 Weak transcription Right Atrium heart
6 chr4:53878800-53886200 Weak transcription Psoas Muscle Psoas
7 chr4:53879200-53885000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
8 chr4:53879200-53885800 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr4:53879400-53885600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr4:53879400-53887800 Weak transcription Fetal Heart heart
11 chr4:53879400-53888400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
12 chr4:53879400-53889600 Weak transcription Aorta Aorta
13 chr4:53879600-53885800 Weak transcription HUVEC blood vessel
14 chr4:53879600-53887600 Weak transcription Colon Smooth Muscle Colon
15 chr4:53879800-53888600 Weak transcription Duodenum Smooth Muscle Duodenum
16 chr4:53879800-53890000 Weak transcription GM12878-XiMat blood
17 chr4:53880400-53885800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
18 chr4:53880400-53886000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr4:53880400-53891800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
20 chr4:53880600-53888000 Weak transcription Rectal Smooth Muscle rectum
21 chr4:53880800-53883800 Weak transcription Pancreas Pancrea
22 chr4:53880800-53884800 Weak transcription Adipose Nuclei Adipose
23 chr4:53880800-53892800 Weak transcription Primary T cells from cord blood blood
24 chr4:53881000-53885600 Weak transcription Duodenum Mucosa Duodenum
25 chr4:53881000-53885800 Weak transcription Skeletal Muscle Female skeletal muscle
26 chr4:53881000-53886200 Weak transcription Primary hematopoietic stem cells blood
27 chr4:53881600-53883800 Weak transcription Ovary ovary
28 chr4:53881800-53885000 Weak transcription Fetal Intestine Large intestine
29 chr4:53881800-53885000 Weak transcription Fetal Intestine Small intestine
30 chr4:53881800-53885800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
31 chr4:53882200-53884600 Weak transcription Fetal Adrenal Gland Adrenal Gland
32 chr4:53882200-53885000 Weak transcription Fetal Kidney kidney
33 chr4:53882200-53885800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
34 chr4:53882200-53885800 Weak transcription Stomach Mucosa stomach
35 chr4:53882600-53884400 Weak transcription A549 lung
36 chr4:53882600-53885400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr4:53882600-53885600 Weak transcription NHDF-Ad bronchial
38 chr4:53882600-53885800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr4:53882600-53886000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
40 chr4:53882600-53886000 Weak transcription HSMM muscle
41 chr4:53882600-53886200 Weak transcription Fetal Lung lung
42 chr4:53882600-53888200 Weak transcription Fetal Stomach stomach
43 chr4:53882800-53885400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr4:53882800-53886000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr4:53882800-53886000 Weak transcription NHLF lung
46 chr4:53883000-53885200 Weak transcription Osteobl bone
47 chr4:53883000-53885400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
48 chr4:53883000-53885600 Weak transcription Muscle Satellite Cultured Cells --
49 chr4:53883200-53896400 Weak transcription Primary B cells from cord blood blood
50 chr4:53883400-53884000 Enhancers HSMMtube muscle

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Last update: Aug 31, 2015