Variant report

Variant	rs73144941
Chromosome Location	chr4:53813871-53813872
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:53807613..53810366-chr4:53813380..53815207,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs17082212	1.00[AMR][1000 genomes]
rs17082290	1.00[AMR][1000 genomes]
rs17082420	1.00[AMR][1000 genomes]
rs28817423	1.00[AMR][1000 genomes]
rs4386657	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57223947	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57470249	1.00[AMR][1000 genomes]
rs57632491	1.00[AMR][1000 genomes]
rs57968004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59033313	1.00[AMR][1000 genomes]
rs59033992	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59945377	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60967961	1.00[AMR][1000 genomes]
rs61689349	1.00[AMR][1000 genomes]
rs6815750	1.00[AMR][1000 genomes]
rs6817299	1.00[AMR][1000 genomes]
rs6854759	1.00[AMR][1000 genomes]
rs6855857	1.00[AMR][1000 genomes]
rs73141439	1.00[AMR][1000 genomes]
rs73141441	1.00[AMR][1000 genomes]
rs73141448	1.00[AMR][1000 genomes]
rs73143431	1.00[AMR][1000 genomes]
rs73143436	1.00[AMR][1000 genomes]
rs73144927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144995	1.00[AMR][1000 genomes]
rs73149135	1.00[AMR][1000 genomes]
rs73149140	1.00[AMR][1000 genomes]
rs73149142	1.00[AMR][1000 genomes]
rs73149168	1.00[AMR][1000 genomes]
rs73149170	1.00[AMR][1000 genomes]
rs73149171	1.00[AMR][1000 genomes]
rs7441164	1.00[AMR][1000 genomes]
rs7664855	1.00[AMR][1000 genomes]
rs7674948	1.00[AMR][1000 genomes]
rs7683505	1.00[AMR][1000 genomes]
rs7693228	1.00[AMR][1000 genomes]
rs7694536	1.00[AMR][1000 genomes]
rs7696803	1.00[AMR][1000 genomes]
rs7696943	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9684695	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004889	chr4:53436500-54106281	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv537094	chr4:53436500-54106281	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:53734600-53822400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr4:53768800-53815600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:53786600-53861400	Weak transcription	Primary B cells from cord blood	blood
4	chr4:53799600-53820200	Weak transcription	Fetal Stomach	stomach
5	chr4:53800200-53815600	Weak transcription	Primary T cells from cord blood	blood
6	chr4:53800200-53816600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:53800400-53823000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:53801400-53819000	Weak transcription	Fetal Intestine Large	intestine
9	chr4:53805800-53817000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:53806200-53822400	Weak transcription	NHDF-Ad	bronchial
11	chr4:53806400-53815600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:53806400-53816000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr4:53806400-53816400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr4:53806400-53818800	Weak transcription	Fetal Intestine Small	intestine
15	chr4:53806400-53820200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr4:53806600-53815800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr4:53806600-53815800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr4:53806600-53820200	Weak transcription	Pancreas	Pancrea
19	chr4:53807000-53815800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr4:53808600-53828000	Weak transcription	Right Atrium	heart
21	chr4:53808800-53836000	Weak transcription	Esophagus	oesophagus
22	chr4:53810000-53822400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr4:53811000-53815000	Enhancers	Fetal Heart	heart
24	chr4:53811600-53816200	Enhancers	Brain Germinal Matrix	brain
25	chr4:53812000-53818200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:53812000-53820400	Weak transcription	Fetal Lung	lung
27	chr4:53812400-53828000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr4:53812400-53831200	Weak transcription	Aorta	Aorta
29	chr4:53812600-53814600	Enhancers	Fetal Brain Male	brain
30	chr4:53812800-53814800	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr4:53813000-53814400	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr4:53813000-53817200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr4:53813200-53814200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr4:53813200-53815800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr4:53813200-53827000	Weak transcription	Spleen	Spleen
36	chr4:53813400-53814400	Weak transcription	Left Ventricle	heart
37	chr4:53813400-53814800	Enhancers	Liver	Liver
38	chr4:53813400-53815400	Enhancers	Fetal Brain Female	brain
39	chr4:53813400-53815400	Weak transcription	HSMMtube	muscle
40	chr4:53813400-53815600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr4:53813400-53823200	Weak transcription	Psoas Muscle	Psoas
42	chr4:53813600-53814000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr4:53813600-53814000	Weak transcription	Fetal Muscle Leg	muscle
44	chr4:53813600-53814400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr4:53813600-53816400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr4:53813600-53819600	Weak transcription	Ovary	ovary
47	chr4:53813600-53822800	Weak transcription	NHLF	lung
48	chr4:53813600-53823000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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