Variant report

Variant	rs73141439
Chromosome Location	chr4:53890259-53890260
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs17082212	1.00[AMR][1000 genomes]
rs17082290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17082420	1.00[AMR][1000 genomes]
rs28817423	1.00[AMR][1000 genomes]
rs4386657	1.00[AMR][1000 genomes]
rs57223947	1.00[AMR][1000 genomes]
rs57470249	1.00[AMR][1000 genomes]
rs57632491	1.00[AMR][1000 genomes]
rs57968004	1.00[AMR][1000 genomes]
rs59033313	1.00[AMR][1000 genomes]
rs59033992	1.00[AMR][1000 genomes]
rs59945377	1.00[AMR][1000 genomes]
rs60967961	1.00[AMR][1000 genomes]
rs61689349	1.00[AMR][1000 genomes]
rs6815750	1.00[AMR][1000 genomes]
rs6817299	1.00[AMR][1000 genomes]
rs6854759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6855857	1.00[AMR][1000 genomes]
rs73141441	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141448	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143431	1.00[AMR][1000 genomes]
rs73143436	1.00[AMR][1000 genomes]
rs73144927	1.00[AMR][1000 genomes]
rs73144941	1.00[AMR][1000 genomes]
rs73144946	1.00[AMR][1000 genomes]
rs73144995	1.00[AMR][1000 genomes]
rs73149135	1.00[AMR][1000 genomes]
rs73149140	1.00[AMR][1000 genomes]
rs73149142	1.00[AMR][1000 genomes]
rs73149168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149170	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7441164	1.00[AMR][1000 genomes]
rs7664855	1.00[AMR][1000 genomes]
rs7674948	1.00[AMR][1000 genomes]
rs7683505	1.00[AMR][1000 genomes]
rs7693228	1.00[AMR][1000 genomes]
rs7694536	1.00[AMR][1000 genomes]
rs7696803	1.00[AMR][1000 genomes]
rs7696943	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004889	chr4:53436500-54106281	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv537094	chr4:53436500-54106281	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv508280	chr4:53825060-53907661	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:53880400-53891800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:53880800-53892800	Weak transcription	Primary T cells from cord blood	blood
3	chr4:53883200-53896400	Weak transcription	Primary B cells from cord blood	blood
4	chr4:53886200-53891200	Enhancers	Psoas Muscle	Psoas
5	chr4:53886200-53892400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:53886400-53892400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:53887000-53892400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:53887200-53892400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:53888000-53890600	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr4:53888400-53892400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:53889000-53894800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:53889600-53892400	Weak transcription	Fetal Heart	heart
13	chr4:53889600-53892400	Weak transcription	Ovary	ovary
14	chr4:53889600-53895000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr4:53890000-53890600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr4:53890000-53890800	Enhancers	GM12878-XiMat	blood
17	chr4:53890200-53894800	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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